Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l08
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 84 1e-17
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 31 0.14
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 27 2.2
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 3.0
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 3.9
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 3.9
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 5.2
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 9.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.0
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 83.8 bits (198), Expect = 1e-17
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Frame = +2
Query: 62 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 238
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 239 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRR 412
R + K +KPAK L R+ A A R YK + + YR DL K ++ R
Sbjct: 61 PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119
Query: 413 ASAILRSQRP 442
ASAIL SQRP
Sbjct: 120 ASAILSSQRP 129
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 265 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 119
+HYC S + LHDT LV G + S +++ + D L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 41 PNTTCSQCVRRQK 3
PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 475 GCGCLSLFCFDGPLG 431
GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 126 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 16
FFT ++L + S I Y Y HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +2
Query: 101 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 277
NN ++L+KK+ K P+ V + NG+ K A V P RK + +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243
Query: 278 ATRKPAKNL 304
+ NL
Sbjct: 244 CNKAEDCNL 252
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 74 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 181
S ++ + + NNN ++V + +I+ P+S + LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 222 PTAFL*IKPLYLKEWRLVTLFGSLLN 145
PT+F IKPL + +R+ L+ LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 514 FKNLLSAYKLFRLGCGCLSLFC 449
FKN+ +A+ LF C+ LFC
Sbjct: 152 FKNIANAFFLFVTLLQCIPLFC 173
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 205 SQESRWCRGEP*QEGIHSSVQESKGY 282
S +S W +P + IHSSVQE++G+
Sbjct: 2 SNKSAW---QPQFDEIHSSVQEAEGF 24
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,732
Number of Sequences: 5004
Number of extensions: 41761
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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