Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l06
(628 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and... 301 6e-81
UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and... 283 2e-75
UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa s... 167 3e-40
UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2; ... 147 2e-34
UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (R... 134 1e-30
UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa ... 132 5e-30
UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and... 130 2e-29
UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1; ... 128 1e-28
UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and... 128 1e-28
UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase... 122 9e-27
UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1... 120 4e-26
UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa s... 108 9e-23
UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa s... 106 4e-22
UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa ... 106 4e-22
UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain ... 98 1e-19
UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA polym... 96 5e-19
UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain ... 91 2e-17
UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2; ... 90 3e-17
UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like prote... 84 2e-15
UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA polym... 79 9e-14
UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep: Tcc... 77 3e-13
UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 72 1e-11
UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1; Bige... 71 2e-11
UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113, w... 64 3e-09
UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia intesti... 59 1e-07
UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1; Arabi... 53 6e-06
UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putati... 51 3e-05
UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain ... 48 2e-04
UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain ... 47 4e-04
UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella... 46 7e-04
UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putativ... 44 0.003
UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia intest... 38 0.26
UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putativ... 38 0.26
UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.4
UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2; ... 35 1.8
UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2; ... 34 3.2
UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Re... 34 3.2
UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:... 34 3.2
UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in chr... 33 7.4
UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance pro... 33 7.4
UniRef50_P15740 Cluster: DNA-directed RNA polymerase subunit H; ... 33 7.4
UniRef50_Q2BEJ7 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
UniRef50_A3HNI0 Cluster: Phage tail tape measure protein, lambda... 32 9.8
>UniRef50_P19388 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=16; Eumetazoa|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Homo
sapiens (Human)
Length = 210
Score = 301 bits (740), Expect = 6e-81
Identities = 138/170 (81%), Positives = 154/170 (90%)
Frame = +1
Query: 115 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 294
MDD+ ETY+LW+IRKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL V
Sbjct: 1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV 60
Query: 295 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 474
LVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLVD
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 475 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
MAPKYILEQFL+ ELLINITEHELVPEH+V+T +E ELLARYKL+EN L
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>UniRef50_Q9N5K2 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=32; Eukaryota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Caenorhabditis elegans
Length = 211
Score = 283 bits (695), Expect = 2e-75
Identities = 127/169 (75%), Positives = 151/169 (89%)
Frame = +1
Query: 118 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 297
DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 298 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 477
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 478 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLARYKLK++ L
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>UniRef50_O81098 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=2; Arabidopsis thaliana|Rep: RNA polymerase
I, II and III 24.3 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 205
Score = 167 bits (405), Expect = 3e-40
Identities = 79/167 (47%), Positives = 114/167 (68%)
Frame = +1
Query: 124 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 303
+ E +L+RI+KT+MQ+ DRGY + EL T +QF + GD R DL+ L A
Sbjct: 4 EEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKA 58
Query: 304 HNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAP 483
+D +DQ+++FFPDEAK+G+KT+K Y RM+ EN+ RAI+VVQ ++P A+ + +++
Sbjct: 59 KRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISS 118
Query: 484 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
K+ LE F E+E+L+NI EH LVPEH VLT +EK+ LL RY +KE L
Sbjct: 119 KFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQL 165
>UniRef50_A2WW48 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 227
Score = 147 bits (357), Expect = 2e-34
Identities = 75/162 (46%), Positives = 106/162 (65%)
Frame = +1
Query: 139 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 318
+L RIR+TVMQ+ DRGYLV + EL F ++G+ R DL++ +DP
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68
Query: 319 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 498
+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK LE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128
Query: 499 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
F E+ELLINI EH LVPEH VL +EK+ LL RY LKE +
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQV 170
>UniRef50_Q4U8E3 Cluster: DNA-directed RNA polymerase, subunit (RPB5
homologue), putative; n=11; Aconoidasida|Rep:
DNA-directed RNA polymerase, subunit (RPB5 homologue),
putative - Theileria annulata
Length = 205
Score = 134 bits (325), Expect = 1e-30
Identities = 67/168 (39%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
Frame = +1
Query: 124 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 303
D E +L+R R+T ++ DRGY + E +T +FK ++ + +K RS ++++ +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARY--EMYDK--VRSKMLLVAS 57
Query: 304 HNDDPTDQMFVFFPDEAK-IGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMA 480
+++ V+F DE K G+K I+ RM++ +IHRAI+V Q ++P AK ++++
Sbjct: 58 LRTAAENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAY 117
Query: 481 PKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
PK I+E F+E+ELL+NIT+HELVP+HI LT +EKQ LL +YK+KE+ +
Sbjct: 118 PKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQI 165
>UniRef50_Q5KN51 Cluster: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerases ii 24 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 221
Score = 132 bits (320), Expect = 5e-30
Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 9/174 (5%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPS---------EKRPARS 282
E +LWR+ +TV ++ DRGYL+ E++ + E+FK++ G S +K +RS
Sbjct: 8 ELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRS 67
Query: 283 DLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 462
++ H +D TD++FV+F + + ++KT+ M + R I++ MSP+AK+
Sbjct: 68 NMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKK 127
Query: 463 SLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
+L +M +Y LE F ES+LL+NIT+H LVP+H V+ P+EK L+ RY+LKE L
Sbjct: 128 TLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQL 181
>UniRef50_Q757H7 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=14; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 - Ashbya
gossypii (Yeast) (Eremothecium gossypii)
Length = 215
Score = 130 bits (315), Expect = 2e-29
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 10/181 (5%)
Frame = +1
Query: 112 NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 291
+ D++ +LWR +TV ++ DRGY +TQ+E+D +LE FK ++ D S RP R
Sbjct: 2 DQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK--- 56
Query: 292 VLVAHNDDPTDQ----------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAG 441
+++ +PT++ ++V F DE +GIKT+K + + E+N I + Q G
Sbjct: 57 -MMSFQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNG 115
Query: 442 MSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENM 621
++PSA + L +AP I E F E+ L++NIT HELVP+HI L+ +EK+ELL RY+LKE+
Sbjct: 116 ITPSALKLLPSVAPATI-ETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQ 174
Query: 622 L 624
L
Sbjct: 175 L 175
>UniRef50_Q4P7S7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 554
Score = 128 bits (309), Expect = 1e-28
Identities = 61/162 (37%), Positives = 98/162 (60%)
Frame = +1
Query: 115 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 294
M+DD ET +LWR+ +T+ +L DRGY V DE+ LE FK ++ P+ R+ L
Sbjct: 1 MEDDRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYA--PTGGSVDRNKLNF 58
Query: 295 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 474
H + ++FVF+ + +G+KT++ + + M+E +I R I++ M+ +A++ +
Sbjct: 59 FTEHGEHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDA 118
Query: 475 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLAR 600
M + LE F E+ LL+NIT H LVP+H L P+EK+ELL R
Sbjct: 119 MRGTFHLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
>UniRef50_P20434 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC1; n=13; Ascomycota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 215
Score = 128 bits (309), Expect = 1e-28
Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 6/177 (3%)
Frame = +1
Query: 112 NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 291
+ +++ +LWR +TV ++ DRGY +TQ+E++ LE FK ++ D S RP R +
Sbjct: 2 DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRKMMS 59
Query: 292 VLVAHNDDPTDQ------MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPS 453
++ + ++V F DE +G+KT+KT+ +QE+N I V Q ++PS
Sbjct: 60 FQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPS 119
Query: 454 AKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
A + LV P +E F E+ L++NIT HELVP+HI L+ DEK+ELL RY+LKE+ L
Sbjct: 120 AMK-LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
>UniRef50_UPI000155BB73 Cluster: PREDICTED: similar to Polymerase
(RNA) II (DNA directed) polypeptide E, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
Polymerase (RNA) II (DNA directed) polypeptide E,
partial - Ornithorhynchus anatinus
Length = 157
Score = 122 bits (293), Expect = 9e-27
Identities = 55/66 (83%), Positives = 57/66 (86%)
Frame = +1
Query: 154 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 333
R QLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL VLVAHNDDPTDQMF
Sbjct: 46 RNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 105
Query: 334 VFFPDE 351
VFFP E
Sbjct: 106 VFFPGE 111
>UniRef50_UPI0000498D84 Cluster: RNA polymerase subunit Rpb5; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase
subunit Rpb5 - Entamoeba histolytica HM-1:IMSS
Length = 204
Score = 120 bits (288), Expect = 4e-26
Identities = 62/170 (36%), Positives = 104/170 (61%)
Frame = +1
Query: 115 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 294
M+ Y+ W KTV+++ DRGY+ ++++ + TLE FKE+F K E + +L +
Sbjct: 1 MESVTHIYRAW---KTVLEMLRDRGYITSEEDHNTTLEGFKERFY-KGGEGVDHK-ELTI 55
Query: 295 LVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 474
V +D TD + VFF + + + Y T ++ E++ RAI+V + +S KQ +++
Sbjct: 56 KVVKENDATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MME 114
Query: 475 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
+ E LE EL++N+T H LVP+HI+L+P+EKQELL +Y++KE+ L
Sbjct: 115 QPREVKWEALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQL 164
>UniRef50_Q9FJL8 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit-like protein; n=1; Arabidopsis thaliana|Rep: RNA
polymerase I, II and III 24.3 kDa subunit-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 210
Score = 108 bits (260), Expect = 9e-23
Identities = 53/170 (31%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
Frame = +1
Query: 118 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 297
D D E +++++R+TV+Q+ DRGY + + +L+ E+F ++F ++ + L V
Sbjct: 3 DMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVN--KEALFVS 60
Query: 298 VAHNDDPTDQMFVFFPDEAKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMSPSAKQSLVD 474
+P D+++VF+P+ K+G+ IK +M+++ +HR IVVV ++ A+ ++ +
Sbjct: 61 ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120
Query: 475 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
+ +E F E+EL+ NITEH+LV ++ VL K++LL Y +++ L
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQL 170
>UniRef50_Q98RN7 Cluster: RNA polymerase I, II and III 24.3 kDa
subunit; n=1; Guillardia theta|Rep: RNA polymerase I, II
and III 24.3 kDa subunit - Guillardia theta (Cryptomonas
phi)
Length = 214
Score = 106 bits (255), Expect = 4e-22
Identities = 55/173 (31%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Frame = +1
Query: 115 MDDDAETYKLWRIRKTVMQLCHDRGYLV--TQDELDQTLEQFKEQFGDKPSEKRPARSDL 288
M+DD L+++R+TV+Q+ DRGY+V ++D+L+ + F+E + R L
Sbjct: 1 MNDDKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFY---MKNHAICRKSL 57
Query: 289 IVLVAHNDDPTDQMFVFF----PDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSA 456
+ D+P +++ + F D+ IG+K+I+ +C R++ E R ++++ ++P A
Sbjct: 58 EIKRPRWDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHA 117
Query: 457 KQSLVDM-APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLK 612
KQ++ + + ++E F E+EL++NIT H LVP+H +L+ +E + LL RY +K
Sbjct: 118 KQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIK 170
>UniRef50_Q0D0C1 Cluster: DNA-directed RNA polymerases II 24 kDa
polypeptide; n=1; Aspergillus terreus NIH2624|Rep:
DNA-directed RNA polymerases II 24 kDa polypeptide -
Aspergillus terreus (strain NIH 2624)
Length = 219
Score = 106 bits (255), Expect = 4e-22
Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Frame = +1
Query: 112 NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLI 291
++D D E +LWR +TV ++ DR Q L + K + +P+E + +
Sbjct: 9 SVDADREMTRLWRTWRTVFEMLQDRPS--PQRILLTLASRAKMKIQARPTEAMQVKYTPL 66
Query: 292 VLVAHNDDPTD--QMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 462
+ P D ++V F PD + +G K ++ + + E N H I + Q +SPSA +
Sbjct: 67 TKQGQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVR 126
Query: 463 SLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
L+ P I E F E +LL+NIT HELVP+H++L+P+EK+ LL RY+LKE+ L
Sbjct: 127 -LLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQL 179
>UniRef50_Q2QXY2 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein, expressed; n=5; Oryza sativa|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein, expressed - Oryza sativa subsp. japonica (Rice)
Length = 335
Score = 98.3 bits (234), Expect = 1e-19
Identities = 50/165 (30%), Positives = 103/165 (62%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 309
E+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 191
Query: 310 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 489
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 192 SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 250
Query: 490 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
++ F ++LL+NIT+H L P+H VL+ D+K +LL Y ++++ L
Sbjct: 251 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 295
>UniRef50_Q2HW77 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=2; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 224
Score = 96.3 bits (229), Expect = 5e-19
Identities = 61/179 (34%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +1
Query: 97 LSRL*NMDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPA 276
L R+ N + + ET + + RKT+M + HDRGY V++ +L +L +F+ +FG+ P +P
Sbjct: 15 LVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFP---KP- 70
Query: 277 RSDLIVLVAHNDDPTDQMFVFFP---DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMS 447
L V V+ +P+ ++ V FP D K + I++ + +E + R I+V+Q+ M+
Sbjct: 71 -HTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQI--VDKERLSRLILVMQSKMT 127
Query: 448 PSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
A++ L + K + Q ++LL+N+T+H L P++ VLT +EKQ+LL +YK++E L
Sbjct: 128 SYARKELENCPFKVEIIQL--NDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQL 184
>UniRef50_A2DNL3 Cluster: RNA polymerase Rpb5, N-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, N-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 202
Score = 91.1 bits (216), Expect = 2e-17
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Frame = +1
Query: 145 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTD 324
+RI T+ Q+ DRGY V L+ + ++F + + P S++ +
Sbjct: 10 FRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHNLNECYSNM---------EGE 60
Query: 325 QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAG-MSPSAKQSLVDMAPK-YILE 498
++ FF ++ KTI+T M E ++RAIV+ G ++P+A ++L ++ +E
Sbjct: 61 RILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIE 120
Query: 499 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
F E++INITEHELVP+H VLT DEKQE+L RY + E L
Sbjct: 121 FFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQL 162
>UniRef50_A4QW70 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 259
Score = 90.2 bits (214), Expect = 3e-17
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Frame = +1
Query: 139 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPAR-------SD-LIV 294
KLWR +T+ Q+ DRGY ++++E + ++E+F F D ++ SD ++
Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71
Query: 295 LVAHNDDPTD--------QMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSP 450
L A PTD ++V F +E KIG+ K + + + I+V Q +S
Sbjct: 72 LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131
Query: 451 SAKQSL-VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
A+++L + +E F+ +LL+NIT HELVP+H++L+ EK+ LL RY+LKE L
Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQL 190
>UniRef50_Q9M1H8 Cluster: RNA polymerase 24kDa subunit-like protein;
n=2; core eudicotyledons|Rep: RNA polymerase 24kDa
subunit-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 233
Score = 84.2 bits (199), Expect = 2e-15
Identities = 49/166 (29%), Positives = 90/166 (54%), Gaps = 1/166 (0%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 309
E+ + + R T ++ DRGY V + EL TL +F+ FG+KP +R L + V
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELER-----LRICVPLR 89
Query: 310 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEE-NIHRAIVVVQAGMSPSAKQSLVDMAPK 486
DP ++ V F I +K+++ ++ +H I+V+Q+ M+ A+++L
Sbjct: 90 SDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--P 147
Query: 487 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
+ +E F +LL+NIT+H P+ +L +EK++LL ++ L++ L
Sbjct: 148 FTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQL 193
>UniRef50_A2Q2Z5 Cluster: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal; n=7; core
eudicotyledons|Rep: RNA polymerase subunit, RPB5; RNA
polymerase Rpb5, N-terminal - Medicago truncatula
(Barrel medic)
Length = 248
Score = 79.0 bits (186), Expect = 9e-14
Identities = 45/166 (27%), Positives = 92/166 (55%), Gaps = 1/166 (0%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 309
E+++ + R+TV+++ DRGY + DE+ +L+ F++ G P R L + H
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDR-----LRLTATHA 104
Query: 310 DDPTDQMFVFFPDEAKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMSPSAKQSLVDMAPK 486
+P+ ++ V F + + ++ ++ E++ I++VQ ++ A +++ ++ K
Sbjct: 105 TNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFK 164
Query: 487 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
+E F ++LL+N T+H L P+H VLT +K+ LL +Y ++E L
Sbjct: 165 --VEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQL 208
>UniRef50_Q8T1Q5 Cluster: Tcc44h21-2.4; n=3; Trypanosoma|Rep:
Tcc44h21-2.4 - Trypanosoma cruzi
Length = 219
Score = 77.0 bits (181), Expect = 3e-13
Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 4/166 (2%)
Frame = +1
Query: 139 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAH-NDD 315
K++R+ +TV ++ DR Y V + ++E+FK+ + D P E R + V
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD-PREGVIYRDRMTVPCERIGVS 75
Query: 316 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI- 492
+ VFF + + ++T+K Y T+ E N R I+VVQ ++ K+ + D+ +
Sbjct: 76 QRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLG 133
Query: 493 --LEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
++ F E +L++NIT HELVP+H L +E +E+L + L+ + L
Sbjct: 134 LKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSAL 179
>UniRef50_Q8SRJ3 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 212
Score = 71.7 bits (168), Expect = 1e-11
Identities = 45/152 (29%), Positives = 83/152 (54%)
Frame = +1
Query: 154 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMF 333
R T +++ DRGY TQ+ L L+ F E++ ++ RS L + + D P +
Sbjct: 22 RNTAIEMVRDRGYTTTQEVL--ALDGFHERYPLALTK----RSTLNFVCVNVDRP---VA 72
Query: 334 VFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLES 513
V F D+ K+G K + ++ +++N+ I+++ SP+ S++ + P++ +E FL
Sbjct: 73 VHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTV-MSMIPLTPRFSIEIFLVE 131
Query: 514 ELLINITEHELVPEHIVLTPDEKQELLARYKL 609
EL+ N T+H VP H VL+ +E++ + KL
Sbjct: 132 ELIFNKTKHSWVPPHRVLSREERESVFRTLKL 163
>UniRef50_Q3LW39 Cluster: RNA polymerase I, II and III; n=1;
Bigelowiella natans|Rep: RNA polymerase I, II and III -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 204
Score = 70.9 bits (166), Expect = 2e-11
Identities = 41/162 (25%), Positives = 84/162 (51%)
Frame = +1
Query: 139 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 318
K + ++ ++ + RGY V + L+ QFK++ +K KR +S ++ H +D
Sbjct: 8 KYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEK---KRYFKS--FKIINHLNDT 62
Query: 319 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 498
+++ F+ ++ I + + + + N + I + + +S +L + +E
Sbjct: 63 NNKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIE 122
Query: 499 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
F E E+LIN +H LVP+H++L PD K+++L Y +K++ L
Sbjct: 123 IFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQL 164
>UniRef50_A0BL34 Cluster: Chromosome undetermined scaffold_113,
whole genome shotgun sequence; n=3; cellular
organisms|Rep: Chromosome undetermined scaffold_113,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 224
Score = 64.1 bits (149), Expect = 3e-09
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 14/183 (7%)
Frame = +1
Query: 118 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDEL---DQTLEQFKEQFGDKPSEKRPARSDL 288
+D A K +++ +T+ + RGY + D+ E F+ ++ ++ P R
Sbjct: 9 EDKASIKKKYKVFQTLASMIRQRGYFEANPPILIEDEPFELFEAKYR---TDVLPQR--- 62
Query: 289 IVLVAHNDDPTDQMFV-FFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQS 465
V+ +D TD+M + F+ + + K Y + + + R I+V + Q
Sbjct: 63 -VVCFKKEDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQV 121
Query: 466 L----------VDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKE 615
+ V+ Y E F E +L+ ++T+HELVP+HI+L EK+ LL +Y + +
Sbjct: 122 VEKKARFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVD 181
Query: 616 NML 624
N L
Sbjct: 182 NQL 184
>UniRef50_Q7QNN3 Cluster: GLP_738_3930_4619; n=2; Giardia
intestinalis|Rep: GLP_738_3930_4619 - Giardia lamblia
ATCC 50803
Length = 229
Score = 58.8 bits (136), Expect = 1e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 19/183 (10%)
Frame = +1
Query: 133 TYKLWRIRKTVMQLCHDRGYLVTQDE---------LDQTLEQFKEQFGDKPSEKRPARSD 285
T + +++R+TV+++ DRGY+V D+ L+QT + F +F P + +
Sbjct: 7 TAESFKVRRTVIEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTH 66
Query: 286 LIVLVAHNDDPTDQMFVF-FPDEAKIGIKTIKTYCTRMQEENIHRAIVVV--QAGM---S 447
+ + N + + V P K I +K + + R I V+ + G S
Sbjct: 67 KLRKSSANSLNQETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDS 126
Query: 448 PSAK-QSLVDMAPK---YILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKE 615
P+ Q+ +D A + ++E FL + LLINIT+H LVP+H++L+ EK +L Y+ E
Sbjct: 127 PNKTIQARIDEAQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTE 186
Query: 616 NML 624
+
Sbjct: 187 GQI 189
>UniRef50_Q9LUR5 Cluster: RNA polymerase-like protein; n=1;
Arabidopsis thaliana|Rep: RNA polymerase-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 178
Score = 52.8 bits (121), Expect = 6e-06
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Frame = +1
Query: 415 RAIVVVQAGMSPSAKQSLVDMA---PKYILEQFLESELLINITEHELVPEHIVLTPDEKQ 585
RAI+VVQ + ++Q+LV + P + +E F E EL++N+ EH VPEH LT +EKQ
Sbjct: 67 RAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQ 125
Query: 586 ELLARYKLK 612
+ L R + +
Sbjct: 126 KFLERKRTR 134
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = +1
Query: 124 DAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGD 252
D E +L+ +++T+MQ+ DRGYL+ E+ TLE+F E++GD
Sbjct: 5 DEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGD 47
>UniRef50_Q4QDW4 Cluster: DNA-directed RNA polymerases II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerases II,
putative - Leishmania major
Length = 239
Score = 50.8 bits (116), Expect = 3e-05
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 25/190 (13%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK------------------ 255
E +K +RI +T ++ DR Y V Q + +L +F E++ ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69
Query: 256 -PSEKRPARSDLIVLVAHND---DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAI 423
P K+ R D + L + T + V+F + + +K E R +
Sbjct: 70 LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129
Query: 424 VVVQAGMSPSAKQSL--VDMAPKYI-LEQFLESELLINITEHELVPEHIVLTPDEKQELL 594
V + +P ++++ + + + + E F E EL +NIT HELVP+H L+ +E +++L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189
Query: 595 ARYKLKENML 624
+ L+ N L
Sbjct: 190 HAHALELNQL 199
>UniRef50_A2DEU9 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Trichomonas vaginalis G3|Rep:
RNA polymerase Rpb5, C-terminal domain containing
protein - Trichomonas vaginalis G3
Length = 217
Score = 47.6 bits (108), Expect = 2e-04
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = +1
Query: 307 NDDPTDQMFVFFPDEAKIGIKTIKT----YCTRMQEENIHRAIVVVQAGMS---PSAKQS 465
N+ T+ + + F K+ KT K Y T + H +V + ++ K+
Sbjct: 67 NNTTTEALAIVFDFRDKLTHKTFKEDYFKYYTNADKPITHLILVHQEGSLAHIFDRIKKQ 126
Query: 466 LVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
L + K LE F EL NIT H VP+H VL+ +EK EL RYK+ E L
Sbjct: 127 LRLIGKK--LETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKL 177
>UniRef50_Q24FV0 Cluster: RNA polymerase Rpb5, C-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb5, C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 275
Score = 46.8 bits (106), Expect = 4e-04
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +1
Query: 487 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
Y E F +L+INIT+H+LVP+H+ L EK++L+ +YK+ + L
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQL 235
>UniRef50_Q9P8M6 Cluster: RNA polymerase subunit; n=1; Emericella
nidulans|Rep: RNA polymerase subunit - Emericella
nidulans (Aspergillus nidulans)
Length = 117
Score = 46.0 bits (104), Expect = 7e-04
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +1
Query: 118 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDK 255
D + ET ++WR +TV ++ DRGY VT++E+ L++FK ++ K
Sbjct: 21 DAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYAVK 66
>UniRef50_Q4QDW3 Cluster: DNA-directed RNA polymerase II, putative;
n=3; Leishmania|Rep: DNA-directed RNA polymerase II,
putative - Leishmania major
Length = 342
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Frame = +1
Query: 328 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY------ 489
+ VFF K+ +K + ++ + ++ IVV + P + + +++ +
Sbjct: 196 LMVFFSGSPKLSMKEVHSFREKALKKKASSMIVVTNK-IDPGVRMDVQELSGRMDEATGA 254
Query: 490 ---ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKL 609
++ F E L N+ HE VP H+ LTP E + LA KL
Sbjct: 255 ELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKL 297
Score = 33.5 bits (73), Expect = 4.2
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 121 DDAETYKLWRIRKTVMQLCHDRGYLV 198
++ + +L+R T++QLCHDRGY++
Sbjct: 5 EELKVVRLFRALNTMIQLCHDRGYVI 30
>UniRef50_Q7R0Z1 Cluster: GLP_25_26771_27376; n=2; Giardia
intestinalis|Rep: GLP_25_26771_27376 - Giardia lamblia
ATCC 50803
Length = 201
Score = 37.5 bits (83), Expect = 0.26
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 511 SELLINITEHELVPEHIVLTPDEKQELLARYKLKE 615
S+ LIN T+H LVP+H +L+ EK +LA ++ E
Sbjct: 124 SQFLINPTKHRLVPKHTILSNTEKARVLAELRVTE 158
>UniRef50_Q4DY18 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase
II, putative - Trypanosoma cruzi
Length = 282
Score = 37.5 bits (83), Expect = 0.26
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 508 ESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
E EL NI HE VP+H VL+P+E Q L + ++ + L
Sbjct: 204 EDELAYNIARHETVPQHEVLSPEEAQLFLQQRQISLSQL 242
>UniRef50_A2EAM2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 902
Score = 35.1 bits (77), Expect = 1.4
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQ----DELDQTLEQFKEQFGDKPSEKRPARSDLIVL 297
ET + ++K V +L D LV + D+L + +EQ+ FGD EK R D+I
Sbjct: 671 ETSEYKDVKKAVKKLYRDHCELVKENEEKDKLLKEIEQWYRDFGDFHDEKLSIR-DMIKE 729
Query: 298 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRM 396
+ + ++P +M++ +E+K +T+ R+
Sbjct: 730 LDNRENPLTKMYMDVSNESKTVKETLVICAQRL 762
>UniRef50_Q6LHN4 Cluster: Putative uncharacterized protein; n=2;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 246
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 427 VVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELL 594
+V+ S + L+D+ I E+ LES L IN + ++ P+ +LTPDE+ L
Sbjct: 123 LVEFAESKDLMEMLLDINKDSINEKKLESYLKINDDDPDITPDRNMLTPDERSRRL 178
>UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2;
Ehrlichia ruminantium|Rep: Putative uncharacterized
protein - Ehrlichia ruminantium (strain Gardel)
Length = 521
Score = 33.9 bits (74), Expect = 3.2
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1
Query: 394 MQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEH--ELVPEHI-V 564
++++N+H+ I + + L+ +A KYI++ L +IT+H L P+HI V
Sbjct: 430 IKDKNLHKTIHELLGTQQQVSCHELIKLARKYIMDSCLPHMQFYSITQHTINLNPKHITV 489
Query: 565 LTPD 576
TP+
Sbjct: 490 FTPE 493
>UniRef50_O43304 Cluster: SEC14-like protein 5; n=16; Eutheria|Rep:
SEC14-like protein 5 - Homo sapiens (Human)
Length = 756
Score = 33.9 bits (74), Expect = 3.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 403 ENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLTPDEK 582
EN R ++ +G + LVD + ++ FL E + N+ E LVP+ + +T +E+
Sbjct: 501 ENTRRKFLIY-SGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQ 559
Query: 583 Q 585
+
Sbjct: 560 E 560
>UniRef50_O60890 Cluster: Oligophrenin 1; n=31; Euteleostomi|Rep:
Oligophrenin 1 - Homo sapiens (Human)
Length = 802
Score = 33.9 bits (74), Expect = 3.2
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 316 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 495
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 496 EQFLES 513
+ ES
Sbjct: 323 RRKTES 328
>UniRef50_UPI000038C848 Cluster: COG1192: ATPases involved in
chromosome partitioning; n=1; Nostoc punctiforme PCC
73102|Rep: COG1192: ATPases involved in chromosome
partitioning - Nostoc punctiforme PCC 73102
Length = 503
Score = 32.7 bits (71), Expect = 7.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 145 WRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHND 312
W R ++ +C D+GY + Q E D TL +++ K E+ + ++ V D
Sbjct: 443 WIPRLNIVSICQDKGYPLYQGEFDNTLVSQEKEAAQKVLERYTNLAQHLIKVTTGD 498
>UniRef50_Q19PJ3 Cluster: TIR-NBS-LRR type disease resistance
protein; n=28; Magnoliophyta|Rep: TIR-NBS-LRR type
disease resistance protein - Populus trichocarpa
(Western balsam poplar) (Populus balsamiferasubsp.
trichocarpa)
Length = 1617
Score = 32.7 bits (71), Expect = 7.4
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +1
Query: 181 DRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKI 360
DRGY V EL ++L +F+ FG+ P L ++ +P ++ V F +I
Sbjct: 4 DRGYDVADTELTRSLMEFRSIFGNCPD-----LDSLRFSISLRSNPYNKNLVIFMGTDEI 58
Query: 361 GIKTIK-TYCTRMQEENIHRAIVVVQAGMSPSAKQ 462
I+ Y + +E+ I+++Q+ M+ AK+
Sbjct: 59 RTANIRAVYGQILSKESRQGLILILQSKMNHFAKK 93
>UniRef50_P15740 Cluster: DNA-directed RNA polymerase subunit H;
n=5; Halobacteriaceae|Rep: DNA-directed RNA polymerase
subunit H - Halobacterium salinarium (Halobacterium
halobium)
Length = 75
Score = 32.7 bits (71), Expect = 7.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 520 LINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
++++++HELVPEH VL + +LA Y + L
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTEL 35
>UniRef50_Q2BEJ7 Cluster: Putative uncharacterized protein; n=1;
Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
protein - Bacillus sp. NRRL B-14911
Length = 312
Score = 32.3 bits (70), Expect = 9.8
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 226 EQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP-DEAKIGIKTIKTYCTRMQE 402
E + E D+ K P R L V + DDPTD V +P D KI + + T R+++
Sbjct: 209 ETYLETELDERLAKGPVRFTLSVQLGEKDDPTDDPTVLWPGDRQKIAVGEL-TVNRRLED 267
Query: 403 EN 408
N
Sbjct: 268 SN 269
>UniRef50_A3HNI0 Cluster: Phage tail tape measure protein, lambda
family; n=1; Pseudomonas putida GB-1|Rep: Phage tail
tape measure protein, lambda family - Pseudomonas putida
(strain GB-1)
Length = 908
Score = 32.3 bits (70), Expect = 9.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 181 DRGYLVTQDELDQTLEQFKEQFGDKPSEKRPA 276
D G + T+ EL+Q + +EQF DKP K PA
Sbjct: 447 DGGRVYTEAELNQLRDAAREQFKDKPVHKGPA 478
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,969,026
Number of Sequences: 1657284
Number of extensions: 12781231
Number of successful extensions: 33349
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 32210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33313
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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