Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l06
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.8  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.8  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   6.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.4  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 609 QLISCQEFLLFIRC---QHNMFRYQLVFGYINQ*FRFKELF*NVF 484
           Q I+ Q+  +FI     +HN+ R +    Y N+ F +  LF ++F
Sbjct: 121 QKINVQQSGIFINLPFLEHNLIRLKNCVIYFNRIFGWNILFGHIF 165



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 357 NWYKNYKDILYKNARREYS*GYCCC 431
           +WY    ++ Y N  R+Y     CC
Sbjct: 38  SWYYLLTNLTYNNTNRKYYWLNVCC 62


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 174 QLHYSFTYTPEFVSF 130
           Q HY FTY P  + F
Sbjct: 186 QFHYIFTYMPYNIVF 200


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 242 CSLNCSKVWSNSSCVTKYPR 183
           C L C K +S+SS +TK+ R
Sbjct: 80  CRL-CKKAFSDSSTLTKHLR 98


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 242 CSLNCSKVWSNSSCVTKYPR 183
           C L C K +S+SS +TK+ R
Sbjct: 336 CRL-CKKAFSDSSTLTKHLR 354


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,541
Number of Sequences: 336
Number of extensions: 3716
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)