Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l06
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0314 - 24328019-24328144,24329027-24329062,24329780-243298... 153 8e-38
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582... 147 5e-36
12_01_0261 - 1917149-1917274,1917809-1917922,1918155-1918331,191... 98 4e-21
11_01_0263 - 1998399-1998524,1999055-1999168,1999400-1999576,200... 98 4e-21
08_02_0636 + 19567654-19568859 29 3.0
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959... 27 9.2
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 27 9.2
03_02_0488 - 8824980-8825267,8825364-8827775 27 9.2
>04_04_0314 -
24328019-24328144,24329027-24329062,24329780-24329893,
24329997-24330176,24330313-24330510
Length = 217
Score = 153 bits (372), Expect = 8e-38
Identities = 76/172 (44%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
Frame = +1
Query: 115 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 294
M + ET +L+RIR+TVMQ+ DRGYLVT+ ++D F +FGD P D +V
Sbjct: 1 MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGD------PVDRDHLV 54
Query: 295 LVAHN-DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 471
H D+ DQ++VFFP +AK G+KTI++Y RM++E++ I+VVQ +S A+ ++
Sbjct: 55 FSRHKKDNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQ 114
Query: 472 DMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLM 627
+++ K+ LE F E+ELL+NI +H LVPEH +LTP++K+ LL RY +KE ++
Sbjct: 115 EVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQIL 166
>01_06_1059 -
34156139-34156238,34157113-34157189,34158146-34158259,
34158390-34158569,34159312-34159524
Length = 227
Score = 147 bits (357), Expect = 5e-36
Identities = 75/162 (46%), Positives = 106/162 (65%)
Frame = +1
Query: 139 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 318
+L RIR+TVMQ+ DRGYLV + EL F ++G+ R DL++ +DP
Sbjct: 14 RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68
Query: 319 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 498
+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK LE
Sbjct: 69 SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128
Query: 499 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
F E+ELLINI EH LVPEH VL +EK+ LL RY LKE +
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQV 170
>12_01_0261 -
1917149-1917274,1917809-1917922,1918155-1918331,
1919075-1919341
Length = 227
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/165 (30%), Positives = 103/165 (62%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 309
E+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 83
Query: 310 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 489
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 84 SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 142
Query: 490 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
++ F ++LL+NIT+H L P+H VL+ D+K +LL Y ++++ L
Sbjct: 143 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 187
>11_01_0263 -
1998399-1998524,1999055-1999168,1999400-1999576,
2000321-2000587
Length = 227
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/165 (30%), Positives = 103/165 (62%)
Frame = +1
Query: 130 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 309
E+++L+ R+T M++ DRGY V + E+ +TL +F+ + +KP +R A + +V
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 83
Query: 310 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 489
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 84 SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 142
Query: 490 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
++ F ++LL+NIT+H L P+H VL+ D+K +LL Y ++++ L
Sbjct: 143 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 187
>08_02_0636 + 19567654-19568859
Length = 401
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = -1
Query: 343 ERKQTSDPLDHHYEPLTQSNHFLLVFSHLVYRQTAL*IVLKFGPIHLA*LNILGHGTTAL 164
+ ++ D + + EP T S + SH++Y TA ++ F P + + GT +
Sbjct: 65 DSQKVFDEMPSNKEPTTASV-LHVTMSHVLYPVTAEVLLQVFSPYGAEEVRVYNQGTIQV 123
Query: 163 QFYVYARVCK 134
+ ++ R+C+
Sbjct: 124 EAFILFRLCQ 133
>11_06_0060 -
19695338-19695477,19695641-19695734,19695818-19695973,
19696109-19696168,19696384-19696602,19696607-19697036,
19698428-19698747
Length = 472
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 331 FVFFPDEAKIGIKTIKTYCTRMQEENIHRAI 423
F P + GI +K++C+R + +HR++
Sbjct: 440 FAIEPSSLEDGIDRLKSFCSRHSKPKVHRSL 470
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 302 LIMMIQRIRCLFSFLMXXXXXXXXXRHIVQECKKRIFIGLLLLSRRECHHQLNSH 466
L+ IQRI +F R+++Q K+ + L RR+CHH L+S+
Sbjct: 143 LLHQIQRIDSVFVTYRYDLNSTEAERNVIQTNKRNDYEKL----RRKCHHVLHSY 193
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 301 AHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQS 465
A N + DQ+ E ++ + K+ C + ++ ++HR V+V + PS+++S
Sbjct: 615 AGNKNKKDQLVYNIVGEMRVSHR--KSRCYQAEKNHLHREFVLVGSEQLPSSEES 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,499
Number of Sequences: 37544
Number of extensions: 331993
Number of successful extensions: 765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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