Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l06
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22) 31 0.58
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 29 3.1
SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_23141| Best HMM Match : GAF (HMM E-Value=0.00015) 29 4.1
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1) 28 7.1
SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.1
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
Length = 276
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 276 CWSFLTWFIAKLLFKLF*SLVQFILRD*ISSVMAQLHYSFTYTPEFVSFCV 124
CWSF W IA L+ +F +RD +S + Y F Y+ F++ CV
Sbjct: 229 CWSF--WMIAHFLYLVF------NIRDEANSNLIAASYVFLYSNGFINICV 271
>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 346 DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLI 525
DEA K +K M++ +H A V +PSA + + K+ L+ E E+L
Sbjct: 257 DEAGAANKRVKEAPIWMKQSTVHSAPEAVAQAATPSAAST----SEKHALDHSTEDEVLA 312
Query: 526 NITEHELV 549
++ HE V
Sbjct: 313 DLLAHESV 320
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 415 RAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELL-INITEHELVPEHI 561
+AIV + SP Q LVD A Y+L+ LESE + HELV ++
Sbjct: 48 KAIVRRLSLPSPPKLQILVDRAAHYVLKNTLESEYAKVKSGIHELVTMYL 97
>SB_35817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 328 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 462
+FVFFP E + I+ Y T + E H + + G S KQ
Sbjct: 69 VFVFFPGEGYRNVHVIRVYDTAVDEYPSHLNLFSDEGGKYNSGKQ 113
>SB_23141| Best HMM Match : GAF (HMM E-Value=0.00015)
Length = 346
Score = 28.7 bits (61), Expect = 4.1
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Frame = +1
Query: 199 TQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA-HNDDPTDQMFVFFPDEAKIGIKTI 375
T ++++ L+ EQF + EK+ + + ++ H+ P+ +M + + + I
Sbjct: 4 TAEQVEAFLDS-NEQFTKRYFEKKTTPAMVEYWMSQHSYKPSSRMAIN-RQSVSLSERKI 61
Query: 376 KTYCTRMQEENIH-RAIVVVQAGMSPSAKQSL-------VDMAPKYI-LEQFLESELLIN 528
C+ + E + RA ++ SP +QS+ +D K++ L + + +EL IN
Sbjct: 62 SGRCSLLAESSTDIRASMLFGRSGSPKQRQSMSFTELSKLDEKDKFMELIRDIANELDIN 121
Query: 529 ITEHELVPEHIVLTPDEKQELLARYKLKENMLM 627
H+++ VLT ++ L + KEN ++
Sbjct: 122 RLSHKILVNVSVLTNADRGSLFLTHGSKENRVL 154
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 391 RMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVLT 570
R +E +H+ + A ++ + K+ D+A K E E+ + +HE ++ T
Sbjct: 3819 REEETAVHKLLKEQDAKLAEAMKELSEDLANKLAAGDLTEDEMRAIMDDHERQIANLATT 3878
Query: 571 PD-EKQELLARYKLK 612
D EK++ +A + K
Sbjct: 3879 LDSEKEKQMASLREK 3893
>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
Length = 440
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +1
Query: 172 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 336
LC D ++T +E Q E+F E+F D P++K P R + + ++ D +
Sbjct: 38 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 97
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +1
Query: 172 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDDPTDQMFV 336
LC D ++T +E Q E+F E+F D P++K P R + + ++ D +
Sbjct: 294 LCGDLSEMITAEEAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSVSLDHRMI 353
>SB_31141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 406 NIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESEL 519
+I +AI+ Q G SPS Q + + IL+Q+L+ L
Sbjct: 139 SIGKAIITFQVGSSPSFGQVRIGLKLLMILKQYLDGGL 176
>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 323
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 253 KPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQE 402
K + KR R I ++ P D + F P E K+ K TY T + E
Sbjct: 68 KANSKRYKRDVAIKIICKKKAPEDFLTKFLPREIKVLKKIKNTYVTTLLE 117
>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1370
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 328 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 462
+FVF+P+E + I+ Y T E H + + G S KQ
Sbjct: 210 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 254
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 172 LCHDRGYLVTQDELDQTLEQFKEQFG-----DKPSEKRPARSDLIVLVAHNDD 315
LC D ++T E Q E+F E+F D P++K P R + + ++ D
Sbjct: 1069 LCGDLSEMITAREAFQMCEKFLEKFKIFFPLDAPNKKTPDRPEHLRVIGGTSD 1121
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 328 MFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQ 462
+FVF+P+E + I+ Y T E H + + G S KQ
Sbjct: 669 VFVFYPEEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQ 713
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,583,253
Number of Sequences: 59808
Number of extensions: 418272
Number of successful extensions: 983
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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