Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l06
         (628 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    24   4.5  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   6.0  
AY255857-1|AAP13483.1|  216|Anopheles gambiae glutathione tranfe...    23   7.9  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 242 CSLNCSKVWSNSSCVTKYPRSWHNCIT 162
           C + CS +WS  S +   P    +C T
Sbjct: 62  CPVPCSSIWSRPSSMRCAPARTASCST 88


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 493  LEQFLESELLINITEHELVPEHIVLTPD 576
            L QFL  E+ +N TEH       +  PD
Sbjct: 1385 LPQFLLKEISLNFTEHMTPGTERIRLPD 1412


>AY255857-1|AAP13483.1|  216|Anopheles gambiae glutathione
           tranferase d9 protein.
          Length = 216

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 619 CSLSAYILPRVLAFHPVSAQYVPV-PTRVRLY*SVVPIQ-GTVLECIWVPYQPVTV 458
           C   A ++     + P    Y P  P R  +    +  + GT+ +CI+V Y PV +
Sbjct: 63  CEPGAILIYLAEQYAPAGTTYYPPDPLRRAIVNQRLLFECGTLYKCIFVYYSPVVL 118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,523
Number of Sequences: 2352
Number of extensions: 14792
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)