Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l06
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical ... 283 5e-77
AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical ... 30 1.2
AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical ... 30 1.6
AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical ... 30 1.6
AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical ... 30 1.6
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 28 6.3
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 28 6.3
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 28 6.3
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 27 8.3
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 27 8.3
>AC006665-4|AAF39906.1| 211|Caenorhabditis elegans Hypothetical
protein H27M09.2 protein.
Length = 211
Score = 283 bits (695), Expect = 5e-77
Identities = 127/169 (75%), Positives = 151/169 (89%)
Frame = +1
Query: 118 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 297
DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3 DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62
Query: 298 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 477
VAHNDDP DQMFVFFP++AKIGIKTIK C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63 VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122
Query: 478 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 624
APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLARYKLK++ L
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>AC006712-4|ABD63214.1| 166|Caenorhabditis elegans Hypothetical
protein Y119C1B.12 protein.
Length = 166
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 491 MYLGAISTSDCLADGDIPAWTTTIAL*IFSSCIL---VQY 381
+Y+G S +C+ D IP W IA +F IL VQY
Sbjct: 43 LYVGISSIGNCMVDERIPVWLICIASGLFLQLILEAVVQY 82
>AF003148-4|AAR25646.1| 301|Caenorhabditis elegans Hypothetical
protein F32B5.6d protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 400 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 570
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 159 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 218
Query: 571 PDEKQELLARYKLKENM 621
E Q++ + EN+
Sbjct: 219 THELQQMAHEIRENENI 235
>AF003148-2|AAR25645.1| 400|Caenorhabditis elegans Hypothetical
protein F32B5.6b protein.
Length = 400
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 400 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 570
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349
Query: 571 PDEKQELLARYKLKENM 621
E Q++ + EN+
Sbjct: 350 THELQQMAHEIRENENI 366
>AF003148-1|AAR25644.1| 432|Caenorhabditis elegans Hypothetical
protein F32B5.6a protein.
Length = 432
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 400 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 570
E I + ++ +QA M PS + L+ ++ KY IL+ + L+ I + P+ +V
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349
Query: 571 PDEKQELLARYKLKENM 621
E Q++ + EN+
Sbjct: 350 THELQQMAHEIRENENI 366
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 388 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 567
T EE I R A +SPS + ILE E L + E ++ + +
Sbjct: 496 TSSVEEKITRDDPPKMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVST 555
Query: 568 TPDEKQE--LLARYKL 609
TP+ K E LLA K+
Sbjct: 556 TPNPKNENPLLAMQKM 571
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 388 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 567
T EE I R A +SPS + ILE E L + E ++ + +
Sbjct: 467 TSSVEEKITRDDPPKMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVST 526
Query: 568 TPDEKQE--LLARYKL 609
TP+ K E LLA K+
Sbjct: 527 TPNPKNENPLLAMQKM 542
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 388 TRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 567
T EE I R A +SPS + ILE E L + E ++ + +
Sbjct: 496 TSSVEEKITRDDPPKMASLSPSNSSDSSSSVRQDILESSEFEEKLKKLEEPPILEQQVST 555
Query: 568 TPDEKQE--LLARYKL 609
TP+ K E LLA K+
Sbjct: 556 TPNPKNENPLLAMQKM 571
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 496 EQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLM 627
+Q +E I +T E I LTP+EKQEL K+ E + M
Sbjct: 984 QQTIEETKTIELTSLEQT--QITLTPEEKQELQILKKIVEEIQM 1025
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 235 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 405
++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523
Query: 406 NI 411
I
Sbjct: 524 MI 525
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 214 DQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFPDEAKIGIKTIKT 381
D E +E+ +K L V +D T F +FP +KIG+ IK+
Sbjct: 23 DDVFEDDEEEVTKGSDDKEEFVPSLFVAPKLSDKSTPNFFDYFPVGSKIGLTWIKS 78
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 235 KEQFGDKPSEKRPARSDLIVLVAH--NDDPTDQMFVFFPD-EAKIGIKTIKTYCTRMQEE 405
++QF D +E+ RS+ IV++ + NDD DQ FP + K+ +I + R
Sbjct: 464 QQQFVDAVAEEEKERSESIVIIQNGRNDDMDDQKPSRFPGADRKLSGNSIHIHLDRRNSR 523
Query: 406 NI 411
I
Sbjct: 524 MI 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,106
Number of Sequences: 27780
Number of extensions: 322678
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -