Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l04
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    27   0.17 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    27   0.17 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    27   0.17 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    27   0.17 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   3.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   4.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   6.5  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   8.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   8.6  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 120 HSK--MGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQE 224
           HSK   G+   +++ D D +F P   HL+  ++KK +
Sbjct: 146 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNK 182


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 120 HSK--MGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQE 224
           HSK   G+   +++ D D +F P   HL+  ++KK +
Sbjct: 460 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNK 496


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 120 HSK--MGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQE 224
           HSK   G+   +++ D D +F P   HL+  ++KK +
Sbjct: 693 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNK 729


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 120 HSK--MGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQE 224
           HSK   G+   +++ D D +F P   HL+  ++KK +
Sbjct: 693 HSKEIRGENTYILALDGDIDFQPEALHLLVDYMKKNK 729


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 213 KKQEKRLIVILENAQLESVKNGNSFELLNCDDHG---HILRKNDRDP 344
           K ++K LI     +   SV N NS E  +   HG   H     D++P
Sbjct: 237 KDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDKNP 283


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 465 NPQTRIPRTF 494
           NPQ ++PRTF
Sbjct: 114 NPQLQVPRTF 123


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 200 YFTHKKAGKTSYSYPGKRT 256
           YFT   +   S ++PG RT
Sbjct: 4   YFTQSTSPSASEAFPGGRT 22


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 437 MNIDLQ*ASSVQRGVHQHEERLMRNI 360
           +N +LQ    V +    HE  L+RN+
Sbjct: 110 LNNNLQYIDEVLKNRDSHETNLLRNV 135


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 437 MNIDLQ*ASSVQRGVHQHEERLMRNI 360
           +N +LQ    V +    HE  L+RN+
Sbjct: 110 LNNNLQYIDEVLKNRDSHETNLLRNV 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,922
Number of Sequences: 336
Number of extensions: 3452
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)