Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20l04
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 186 2e-48
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 28 1.3
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 1.7
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.3
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 27 3.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.0
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 5.3
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 9.3
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 9.3
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 186 bits (454), Expect = 2e-48
Identities = 95/157 (60%), Positives = 115/157 (73%), Gaps = 4/157 (2%)
Frame = +3
Query: 180 PIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNS----FELLNCDDHGHILRKNDRDPG 347
PIP + SH +RLIV+L+ A LE K G + ++LLNCDDH IL+K +R+
Sbjct: 134 PIPARSIGSH-DTTTQRLIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILKKLNRNIA 192
Query: 348 SCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLL 527
RPDITHQ LL L+DSPLN+AG LQVYIHT K VLIE+NP RIPRTFKRF+GLMVQLL
Sbjct: 193 QARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIEVNPSVRIPRTFKRFSGLMVQLL 252
Query: 528 HKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSF 638
HK +IR+ +G KLLKVIKNPVT +LP +K T+SF
Sbjct: 253 HKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRKATLSF 289
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 280 FPFFTLSSCAFSRITIRRFSCFFMCEVTKCLGIGSNSKSSSLETNFLFLPI-LECTLQCY 104
F F+ +CA+ ++I S ++C ++ LG S E + L L + +E + C
Sbjct: 135 FHIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSVLLLNLTIEASKLCI 194
Query: 103 DLFKAIYYDR 74
L++A + D+
Sbjct: 195 YLYEARHLDQ 204
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 522 LLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSFS 641
+L A+ SDG +++L+V ++PV H+ V T F+
Sbjct: 288 ILGFLAVVCSDGKLRVLRVPRSPVKFHVFVEQADFTFGFN 327
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 108 HCKVHSKMGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVIL 245
HCK+HSKM + + +V K + IPK + ++ Q+ + I L
Sbjct: 37 HCKLHSKMLEPKAIVYKKNS---SAIPKRVDNILLRSQKPKHIECL 79
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 580 ITFKSFIGPSDALIANLCRS*TI 512
I ++SFI D L ANLCR+ T+
Sbjct: 121 IRYQSFIALQDKLHANLCRNRTL 143
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 214 FMCEVTKCLGIGSNSKSSSLETNFLFLPILECTLQCYDLFKAIYYD 77
F+ L GS+S ++L ++ FLP + C D+ A++YD
Sbjct: 150 FLAPQDAILSSGSSSSYTAL-LDYTFLPSEDEEYSCLDINTALFYD 194
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 548 CSNCKLV*KLNH*SSKTLECSRYSCLW 468
CS CK ++N S + L C CLW
Sbjct: 38 CSTCK---RINKRSIRCLSCHSVGCLW 61
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 202 VTKCLGIGSNSKSSSLETNFLFLPILECTLQCYDL 98
V K L + +S S E F LPI+ T+Q DL
Sbjct: 165 VEKSLNNIESPESFSYEDAFTLLPIIAATIQLSDL 199
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 162 DDFEFDPIPKHLVTSHIKKQEKRLIVILENAQL 260
+ F+ PIP V H+++ L+V L+N L
Sbjct: 74 EQFQDGPIPDENVKKHVRETLLHLLVSLDNFTL 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,695
Number of Sequences: 5004
Number of extensions: 57009
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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