Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l04
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0499 + 10989645-10989929,10990303-10990395,10990952-109910...   128   4e-30
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    29   4.1  
07_03_1119 - 24118565-24118625,24119868-24119914,24120101-241201...    29   4.1  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    27   9.6  

>02_02_0499 +
           10989645-10989929,10990303-10990395,10990952-10991066,
           10991187-10991297,10991701-10991783,10991872-10991929,
           10992490-10992569
          Length = 274

 Score =  128 bits (309), Expect = 4e-30
 Identities = 72/143 (50%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
 Frame = +3

Query: 216 KQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMD 395
           K+    I +LE A LE  K G + ++LN DDH + LRK +R+P   RPDI HQ+LL + D
Sbjct: 74  KRRPGAIFVLERACLEVGKVGKTMQILNSDDHANYLRKQNRNPADYRPDIIHQALLAIFD 133

Query: 396 SPLNRAGLLQ-VYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLL 572
           SPL +AG LQ VY+ TEK VL EI P  R+P           QLL K +I A     KLL
Sbjct: 134 SPLTKAGRLQAVYVRTEKGVLFEIKPYVRMP----------PQLLQKLSITAVGKREKLL 183

Query: 573 KVIKNPVTSHLPVGVKKITMSFS 641
            VIKNPVT +LPVG KKI +S+S
Sbjct: 184 NVIKNPVTRYLPVGAKKIGLSYS 206


>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 327 FLKC-DHGHHSLIAQSYFHFSRFPVVRFPG 241
           FL C DHGHHSL A++   F R  V+ F G
Sbjct: 907 FLLCHDHGHHSLTAKA---FPRLQVLFFVG 933


>07_03_1119 -
           24118565-24118625,24119868-24119914,24120101-24120160,
           24120715-24120822,24121628-24121831
          Length = 159

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 111 CKVHSKMGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQ 257
           C  H    +  + VSK  D E D +  ++  SH+      L++I  N Q
Sbjct: 104 CCKHQLAARLAEAVSKHQDIELDELSSNIRRSHVADSFTLLLLIRHNNQ 152


>02_04_0157 +
           20388761-20388763,20389807-20389935,20390206-20390349,
           20390690-20390835,20390915-20391071,20391312-20391370,
           20391466-20391664,20392232-20392381,20392471-20392607,
           20392717-20392863,20392975-20393076,20395655-20395712,
           20395816-20395917,20396236-20396273,20396409-20396535,
           20397092-20397259,20397356-20397487,20400222-20400331,
           20400400-20400460,20400929-20401106,20401194-20401399,
           20401552-20401671,20402523-20402621,20404177-20404386,
           20404704-20404843,20404945-20405053,20405351-20405431,
           20405523-20405693,20405825-20405974,20407029-20407202,
           20407453-20407479,20407688-20407758,20407843-20407942,
           20408305-20408361,20409457-20409513,20409656-20409736,
           20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 405 NRAGLLQVYIHTEKNVLIEINPQTRIPRTF 494
           +R G+ ++Y +T  N+LI +NP  R+P  +
Sbjct: 84  SRYGMNEIYTYTG-NILIAVNPFQRLPHLY 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,153
Number of Sequences: 37544
Number of extensions: 318344
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)