Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l04
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43140| Best HMM Match : PC4 (HMM E-Value=3)                         79   2e-15
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)              28   5.6  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           28   5.6  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  28   7.4  
SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_43140| Best HMM Match : PC4 (HMM E-Value=3)
          Length = 152

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 39/77 (50%), Positives = 51/77 (66%)
 Frame = +3

Query: 147 LVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILR 326
           + S+  + +++   K   T   K   +RLIVILE + LE+VKNG +FELLNCD H  IL+
Sbjct: 1   MASQQSEEDYERPKKIPKTLKEKDSGRRLIVILEKSSLEAVKNGKNFELLNCDQHKTILK 60

Query: 327 KNDRDPGSCRPDITHQS 377
           KN RD  S RPDITHQ+
Sbjct: 61  KNKRDISSARPDITHQN 77



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = +3

Query: 270 KNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQS 377
           +NG +FELLNCD H  IL+KN RD  S RPDITHQ+
Sbjct: 76  QNGKNFELLNCDQHKTILKKNKRDISSARPDITHQN 111


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 288 ELLNCDDHGHILRKNDRDPGSCRPDITHQS--LLMLMDSPLN 407
           E LNC   GH   K    P  C  D+ HQ   +L L+ +P++
Sbjct: 717 ECLNCTQ-GHFCEKGSVQPEQCPIDVRHQPPYMLFLLYTPIS 757


>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
          Length = 620

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 525 LHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSF 638
           + KFA +A+ G    ++V K  +TS+L +GV  +   F
Sbjct: 479 IEKFASQAAQGLDPSIRVSKQFITSNLAIGVTSVPAGF 516


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 301 QFNSSKLFPFFTLSSCAFSRITIRRFSCFFMCEVTKCLGIGSN 173
           + +S K F FFT++   +  I+  RF+     EV K +G+ S+
Sbjct: 11  ELSSKKYFRFFTVALQHYGHISSPRFAVVTSEEVAKTIGLHSS 53


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 156 KDDDFEFDPIPKHLVTSHIKKQEKR 230
           KD+DFE D + KH  T + +K +++
Sbjct: 291 KDEDFEEDEVKKHSRTEYSEKNQRK 315


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 310  WSSQFNSSKLFPFFTLSSCAFSRITIRRFS-CFFMCEVTKCLGIGSNSKSSSLE 152
            +S   NSS   P  T S+C+++   ++ F+  FF+    +  G+G +   S+++
Sbjct: 892  FSVDVNSSPSMPTKTASTCSYTMFAVKWFNHIFFLFRSIERSGVGKSGPISTVK 945


>SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 132 GKKRKLVSKDDDFEFDPIPKHLVTSHIKK 218
           GKK ++ S + D E  P+P +LV    KK
Sbjct: 245 GKKERVDSVEQDVEKSPVPTNLVEEFTKK 273


>SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 250 FSRITIRRFSCFFMCEVTKCLGIGSNSKSSSLETNFLFLPILECTLQCYDLFKAIYYDRH 71
           F R T +R   FF CE+   L + +     S    F FLP ++  ++  D     Y   H
Sbjct: 47  FKRETFKR-GLFFDCELGNLLKVDTYGNILSCVHGFDFLPKIKGGVESNDHVMLTYQSIH 105

Query: 70  QE 65
           Q+
Sbjct: 106 QD 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,275,530
Number of Sequences: 59808
Number of extensions: 395713
Number of successful extensions: 1584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)