Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l04
         (642 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72514-1|AAC51641.1|  239|Homo sapiens C2f protein.                   227   3e-59
BC055314-1|AAH55314.1|  244|Homo sapiens EMG1 nucleolar protein ...   227   3e-59
U47924-20|AAB51325.1|  151|Homo sapiens C2f protein.                  150   4e-36

>U72514-1|AAC51641.1|  239|Homo sapiens C2f protein.
          Length = 239

 Score =  227 bits (555), Expect = 3e-59
 Identities = 106/139 (76%), Positives = 118/139 (84%)
 Frame = +3

Query: 225 KRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPL 404
           +RLIV+LE A LE+VK G ++ELLNCD H  IL KN RDPG  RPDITHQSLLMLMDSPL
Sbjct: 36  RRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPL 95

Query: 405 NRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIK 584
           NRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVIK
Sbjct: 96  NRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIK 155

Query: 585 NPVTSHLPVGVKKITMSFS 641
           NPV+ H PVG  K+  SFS
Sbjct: 156 NPVSDHFPVGCMKVGTSFS 174


>BC055314-1|AAH55314.1|  244|Homo sapiens EMG1 nucleolar protein
           homolog (S. cerevisiae) protein.
          Length = 244

 Score =  227 bits (555), Expect = 3e-59
 Identities = 106/139 (76%), Positives = 118/139 (84%)
 Frame = +3

Query: 225 KRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDITHQSLLMLMDSPL 404
           +RLIV+LE A LE+VK G ++ELLNCD H  IL KN RDPG  RPDITHQSLLMLMDSPL
Sbjct: 41  RRLIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPL 100

Query: 405 NRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIK 584
           NRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP KLLKVIK
Sbjct: 101 NRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIK 160

Query: 585 NPVTSHLPVGVKKITMSFS 641
           NPV+ H PVG  K+  SFS
Sbjct: 161 NPVSDHFPVGCMKVGTSFS 179


>U47924-20|AAB51325.1|  151|Homo sapiens C2f protein.
          Length = 151

 Score =  150 bits (364), Expect = 4e-36
 Identities = 69/86 (80%), Positives = 76/86 (88%)
 Frame = +3

Query: 384 MLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPM 563
           MLMDSPLNRAGLLQVYIHT+KNVLIE+NPQTRIPRTF RF GLMVQLLHK ++RA+DGP 
Sbjct: 1   MLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQ 60

Query: 564 KLLKVIKNPVTSHLPVGVKKITMSFS 641
           KLLKVIKNPV+ H PVG  K+  SFS
Sbjct: 61  KLLKVIKNPVSDHFPVGCMKVGTSFS 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,804,831
Number of Sequences: 237096
Number of extensions: 1794886
Number of successful extensions: 3750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3750
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)