Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l04
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-11|CAA21025.1|  231|Caenorhabditis elegans Hypothetical...   178   2e-45
Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF273800-1|AAG15149.1|  272|Caenorhabditis elegans nuclear recep...    29   2.8  
AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical ...    29   3.7  
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U80444-11|AAB37793.2|  304|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AL031633-11|CAA21025.1|  231|Caenorhabditis elegans Hypothetical
           protein Y39A1A.14 protein.
          Length = 231

 Score =  178 bits (434), Expect = 2e-45
 Identities = 84/164 (51%), Positives = 114/164 (69%)
 Frame = +3

Query: 150 VSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRK 329
           +S + D    P  K + T +  + +K L V+LE   LE+ K G  + +L+ D H + LRK
Sbjct: 1   MSHEYDTVAPPNAKRMKTDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRK 60

Query: 330 NDRDPGSCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAG 509
             +DP   RPDI HQ LL L+DSPLNRAG L+V+  T KNVL++++PQ RIPRTF RF G
Sbjct: 61  QKKDPADYRPDILHQCLLNLLDSPLNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCG 120

Query: 510 LMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSFS 641
           LMVQLLHK +IRA++   KL+ V+KNPV++HLPVG +K+ MSF+
Sbjct: 121 LMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFN 164


>Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +3

Query: 195 LVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDI-TH 371
           +VTS +   ++ +  I E  +L S K+   FE+++     H+  KND D      D+  +
Sbjct: 131 VVTSEMAGNDRFVTAIREELELFSNKSTKLFEMIH---FSHMNTKNDTDVDLKLADVKKN 187

Query: 372 QSLLMLMDSPLNRAGLLQVYIHTEKNVLI 458
           Q+ ++L+ +   +AG   ++ H EK  +I
Sbjct: 188 QAKIILLYANAAQAG--TIFSHAEKMDMI 214


>Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = +3

Query: 195 LVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDI-TH 371
           +VTS +   ++ +  I E  +L S K+   FE+++     H+  KND D      D+  +
Sbjct: 131 VVTSEMAGNDRFVTAIREELELFSNKSTKLFEMIH---FSHMNTKNDTDVDLKLADVKKN 187

Query: 372 QSLLMLMDSPLNRAGLLQVYIHTEKNVLI 458
           Q+ ++L+ +   +AG   ++ H EK  +I
Sbjct: 188 QAKIILLYANAAQAG--TIFSHAEKMDMI 214


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
           protein ZC373.4 protein.
          Length = 1211

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +3

Query: 135 KKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNS 284
           KK+KLV  D D    P P+ +        E  L  +     LE V+NGNS
Sbjct: 452 KKKKLVETDGDAGLRPPPELMTKRASTGGESLLAAVKVLKNLEVVENGNS 501


>Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical
           protein F36D3.2 protein.
          Length = 422

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 46  VFETKYFPDDGRSILL*ISHNIARCILKWVKKENW----FLKMMILNLIRF 186
           + ET +FPDD   + L     +  C+ K   K++W    F K+  L+L  F
Sbjct: 154 ILETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEF 204


>AF273800-1|AAG15149.1|  272|Caenorhabditis elegans nuclear receptor
           NHR-54 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 46  VFETKYFPDDGRSILL*ISHNIARCILKWVKKENW----FLKMMILNLIRF 186
           + ET +FPDD   + L     +  C+ K   K++W    F K+  L+L  F
Sbjct: 4   ILETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEF 54


>AF047652-5|AAC04391.2|  449|Caenorhabditis elegans Hypothetical
           protein C34H4.2 protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 258 LESVKNGNSFELLNCDDHGHILRKNDRDPGSCR 356
           L+S KNG  +++ N +D  ++   +D DP + R
Sbjct: 26  LKSYKNGTVYQVANLEDSANLYVASDDDPSNLR 58


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 336 RDPGSCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINP-QTRIPRTFKRFAGL 512
           +D  S  P++ + SLL      L+  G +   I+ +  +L +I+         FK+ +GL
Sbjct: 371 KDVNSDIPNLKYNSLL---PQKLHLIGYIVQVINNKNGILDKIDDISDNNSSDFKKISGL 427

Query: 513 MVQLLHKFAIRASDGPMK 566
           ++ L H F I  S G MK
Sbjct: 428 IMSLRHHFEILKS-GDMK 444


>U80444-11|AAB37793.2|  304|Caenorhabditis elegans Hypothetical
           protein F26B1.1 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 114 KVHSKMGKKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKR 230
           K   K  KKRK   K++D + + I +    + +KK+E R
Sbjct: 46  KKKKKESKKRKKTQKEEDCDSESIKQKKKKARVKKKEVR 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,197
Number of Sequences: 27780
Number of extensions: 320138
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)