Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l03
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    30   1.5  
12_01_0025 + 203476-203655,205006-205233,205317-206000                 29   3.5  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    29   4.6  
03_02_0578 + 9603118-9605633,9605766-9605781                           29   4.6  
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    29   4.6  
10_08_0333 - 16850267-16851802                                         28   6.1  
03_04_0061 - 16949038-16950006                                         28   6.1  

>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 160 LIMLSRMCIGRSAFNVTQSLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRERLMA 339
           L+ L ++ I  SA+ V      P+P NF+ R  +VR     P  R + RS  T      A
Sbjct: 40  LLFLPKIDIPFSAYLVLHKSGIPLPPNFLHRRDLVRARGILPVRRSSARSSTTALTCPAA 99

Query: 340 PAGPNA 357
              PN+
Sbjct: 100 AGDPNS 105


>12_01_0025 + 203476-203655,205006-205233,205317-206000
          Length = 363

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 384 WSLCSWTSCSVLLWLWGKTRYSSGISPLATICE 482
           W L +W     LLWLW   R   G  PL  + E
Sbjct: 9   WVLATWWG-EPLLWLWQPFRAGGGAGPLGHLLE 40


>10_08_0911 -
           21499196-21499236,21499368-21499488,21499665-21499789,
           21500187-21500418,21500488-21500668,21501342-21501438,
           21501641-21501779,21502024-21502351,21502890-21503137,
           21503270-21503543,21504200-21504291,21504451-21504521,
           21505091-21505181,21506526-21507380,21507482-21507594,
           21508007-21508074,21508655-21508835,21509084-21509186,
           21509273-21509379,21510046-21511584,21511661-21511771,
           21511856-21511908,21511988-21512063,21512147-21512366,
           21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 321 SGETHGTCWTKCIQLGQGCISWSLCSWTSCSV 416
           SG+ HG  W + +  G   + +S  +  SCS+
Sbjct: 58  SGQGHGNSWIEVLSTGSSVVDFSSSAAESCSI 89


>03_02_0578 + 9603118-9605633,9605766-9605781
          Length = 843

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 418 YYGSGVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVF-RTPALLNLVARN 594
           Y   G     L  S L P   K+R++   G   G   L  GSA A+  R     N++  +
Sbjct: 584 YMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILLDD 643

Query: 595 GWMSIIVTLGL 627
           G+M+ +   GL
Sbjct: 644 GFMAKVADFGL 654


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 259 VVRNYAREPRTRVATRSQPTLRERLMA 339
           V+RNY   P  R+ T++Q   RER+++
Sbjct: 110 VLRNYVPSPSQRIRTQNQREYRERILS 136


>10_08_0333 - 16850267-16851802
          Length = 511

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
 Frame = -2

Query: 663 LHSSYYHARTNHQT--QCDNNGHPSISCYQI*KCGCSENSNCTTSSQHQRTRDVSICCFY 490
           L+ SY H      T  Q      PSI  +    CG   N +CT +S     RD   C   
Sbjct: 390 LNLSYNHLSGKIPTGNQLQTFTDPSIYSHNSGLCGPPLNISCTNASVASDERDCRTCEDQ 449

Query: 489 TFFHILWPKVRFLKSTWF 436
            F++ +   V F    WF
Sbjct: 450 YFYYCVMAGVVFGFWLWF 467


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/64 (18%), Positives = 27/64 (42%)
 Frame = +1

Query: 430 GVKPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSI 609
           GV   T++ S  W     E ++  YG++  ++ +   +   V +      + A   W+++
Sbjct: 72  GVAKSTVEASQPWLAAAAELLQVIYGWLVAAIAVAVENLPGVAKNTVEYTVEASQPWLAV 131

Query: 610 IVTL 621
              L
Sbjct: 132 AAKL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,993,096
Number of Sequences: 37544
Number of extensions: 404217
Number of successful extensions: 1214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)