Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l03
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)               67   1e-11
SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)                 29   4.7  
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                29   4.7  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.2  
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)               28   6.2  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
          Length = 344

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
 Frame = +1

Query: 415 CYYGSGVKP--GTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVA 588
           CYYG G+    G +  S +WPQ V++RI  TY Y AGSL +TAG+A ++ R+ A+  ++ 
Sbjct: 129 CYYGLGLSSEVGAIDRSVMWPQVVRDRIHATYAYFAGSLAVTAGAAYSISRSRAVYTMMR 188

Query: 589 RN------GWMSIIVTLGLMIGSGMVVRGMEYTPGFGG 684
            +       W+  I+   +++G  +VVR    T G  G
Sbjct: 189 ASPLLLTAHWVGTILAPIMLLGGPLVVRAAVVTAGVVG 226


>SB_54605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 384 WSL-CSWTSCSVLLWLWGKTRYSSGISPLATICERTYKNNIWI 509
           W++ C W   + + W +GK      ++P  T+ E  Y NNI I
Sbjct: 217 WNIDCQWIDVTDMAWKFGKFYLRIVVNPNRTVAETDYDNNIGI 259


>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 978

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
 Frame = +3

Query: 60  SNDN-TNQDDNKLISNNSSCIKEKKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTT 236
           SNDN T+  D +          + +F     +  I+YV+ ++ +    Q NAE ++A   
Sbjct: 25  SNDNQTSSSDGETTVEPVPIFGDDEFYVREVEMDISYVVDDIQK----QANAEQQMADDV 80

Query: 237 KFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTCWTKCIQLGQ 371
             C++K+     C++T  +  + L  HT    +G    KC   G+
Sbjct: 81  TACSKKIYQCDQCSKTFTR-PHDLRRHTKSIHNGEKPYKCEHCGR 124


>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 345 WTKCIQLGQGCI-SWS-LCSWTSCSVLLWLWGKTRYSSGISPL 467
           W KC QL + C  +W    SW+SCSV   L  KTR     +PL
Sbjct: 187 WGKC-QLQEHCPGNWGEWSSWSSCSVTCDLGTKTRTRKCDNPL 228


>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = -1

Query: 502 MLFLYVLSHIVAKGE-IPEEYLVLPQSHSSTEQLV 401
           +L ++VLS++VA+GE   E   +L Q+HSS  QL+
Sbjct: 155 LLSMHVLSNLVARGETYHEAEWILFQAHSSLIQLL 189


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 166 MLSRMCIGRSAFN-VTQSLKSPVPQNFVPRNYVVRNYAREPRTRVATRSQPTLRE 327
           M S  C+G S +  VT+++  P P + + +     N        +AT + P L+E
Sbjct: 574 MASPQCLGYSHYRTVTKTICLPSPDDIINQTLTAVNQIHAKAVYIATDNNPMLQE 628


>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
          Length = 167

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = +3

Query: 342 CWTKC-IQLGQGC--ISWSLCS---WTSCSVLLW 425
           CWTKC I  G  C  +  + C+   WT C+++ W
Sbjct: 98  CWTKCAIVHGTKCAIVHGTKCAIVCWTKCAIVCW 131


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 293 GSLHAHNPHFGRDSWHLLDQMHSAW 367
           G  H H P  G+D  H   Q  SAW
Sbjct: 407 GPYHQHPPRHGQDGGHPSQQPRSAW 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,485,038
Number of Sequences: 59808
Number of extensions: 501070
Number of successful extensions: 1538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)