Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l03
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-619|AAF54013.2|  365|Drosophila melanogaster CG1287-PA ...   119   4e-27
AY075204-1|AAL68072.1|  365|Drosophila melanogaster AT14090p pro...   118   8e-27
BT009945-1|AAQ22414.1|  341|Drosophila melanogaster RH72958p pro...   109   3e-24
AE014298-1546|AAF47994.1|  341|Drosophila melanogaster CG2076-PA...   109   3e-24
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   7.9  

>AE014297-619|AAF54013.2|  365|Drosophila melanogaster CG1287-PA
           protein.
          Length = 365

 Score =  119 bits (286), Expect = 4e-27
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
 Frame = +1

Query: 220 KSPVPQNFVPRNYVVRNYAREPRTR----VATRSQ-PTLRERLMAPAGPNAFXXXXXXXX 384
           KS +P+  + +   +R Y+RE R R    + +R++ P+L+ER+M P   NA+        
Sbjct: 48  KSVIPKRNM-QELGMRKYSRESRDRDRSQLESRTRGPSLKERMMGPPSENAYSMGKGAAA 106

Query: 385 XXXXXXXXXXCYYGSGV--KPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVF 558
                     CYYG G+  +P     S +WPQYV++RI  TY Y   S  +TA SAVA F
Sbjct: 107 GAALMGLVGLCYYGLGLANQPSIYDHSMVWPQYVRDRIHATYAYFGASCGVTAASAVAFF 166

Query: 559 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFG 681
           ++ A++ L+ R+GW++ +VTLGL++ SG + +G+EY PGFG
Sbjct: 167 QSDAMMALMTRSGWVASLVTLGLVMLSGSIAQGLEYQPGFG 207


>AY075204-1|AAL68072.1|  365|Drosophila melanogaster AT14090p
           protein.
          Length = 365

 Score =  118 bits (284), Expect = 8e-27
 Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
 Frame = +1

Query: 220 KSPVPQNFVPRNYVVRNYAREPR----TRVATRSQ-PTLRERLMAPAGPNAFXXXXXXXX 384
           KS +P+  + +   +R Y+RE R    +++ +R++ P+L+ER+M P   NA+        
Sbjct: 48  KSVIPKRNM-QELGMRKYSRESRDHDRSQLESRTRGPSLKERMMGPPSENAYSMGKGAAA 106

Query: 385 XXXXXXXXXXCYYGSGV--KPGTLQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVF 558
                     CYYG G+  +P     S +WPQYV++RI  TY Y   S  +TA SAVA F
Sbjct: 107 GAALMGLVGLCYYGLGLANQPSIYDNSMVWPQYVRDRIHATYAYFGASCGVTAASAVAFF 166

Query: 559 RTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGMEYTPGFG 681
           ++ A++ L+ R+GW++ +VTLGL++ SG + +G+EY PGFG
Sbjct: 167 QSDAMMALMTRSGWVASLVTLGLVMLSGSIAQGLEYQPGFG 207


>BT009945-1|AAQ22414.1|  341|Drosophila melanogaster RH72958p
           protein.
          Length = 341

 Score =  109 bits (263), Expect = 3e-24
 Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
 Frame = +1

Query: 262 VRNYAREP-RTR--VATRSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSG 432
           VR YAR   RTR  V     P+L+E+LM P   NA+                  CYYG G
Sbjct: 40  VRTYARRVVRTREPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVG 99

Query: 433 VKPGT--LQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMS 606
           +   T     + +WPQ+V++RI++TY +  GS VLTA +A A FR+  LL L +R G ++
Sbjct: 100 LGKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILA 159

Query: 607 IIVTLGLMIGSGMVVRGMEYTPGFG 681
            I +L L+IGSG V R +EY PG G
Sbjct: 160 TIASLALVIGSGAVARSIEYQPGLG 184


>AE014298-1546|AAF47994.1|  341|Drosophila melanogaster CG2076-PA
           protein.
          Length = 341

 Score =  109 bits (263), Expect = 3e-24
 Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
 Frame = +1

Query: 262 VRNYAREP-RTR--VATRSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSG 432
           VR YAR   RTR  V     P+L+E+LM P   NA+                  CYYG G
Sbjct: 40  VRTYARRVVRTREPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVG 99

Query: 433 VKPGT--LQESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMS 606
           +   T     + +WPQ+V++RI++TY +  GS VLTA +A A FR+  LL L +R G ++
Sbjct: 100 LGKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILA 159

Query: 607 IIVTLGLMIGSGMVVRGMEYTPGFG 681
            I +L L+IGSG V R +EY PG G
Sbjct: 160 TIASLALVIGSGAVARSIEYQPGLG 184


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -2

Query: 375  TLAQAECIWSSRCHESLPKCGL*ACSDPC-----SRFSCIISDHIVS 250
            T  + ECI+SS C  SL  C    C DPC     +   C + +H+ S
Sbjct: 9667 TGCRPECIYSSECPSSL-ACIKQHCRDPCTAACGANAECTVVNHLPS 9712



 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -2

Query: 681   PKSRCVLHSSYYHARTNHQTQCDNNGHPSISCYQI*KCGCSENSNCTTSSQH 526
             P+ RC+  S          T C +N    I+      C C  N+ CT  + H
Sbjct: 21711 PQERCLPPSDVILVGCKSSTDCPSN-EACINTQCASPCNCGPNAECTVKNHH 21761


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,420,240
Number of Sequences: 53049
Number of extensions: 717923
Number of successful extensions: 2348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2339
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)