Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l03
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...    98   6e-21
Z81118-9|CAM84694.1|  208|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    31   0.78 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.4  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.4  
U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    28   5.5  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   5.5  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    28   5.5  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    28   5.5  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      28   5.5  
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC199169-4|ABO33250.1|  275|Caenorhabditis elegans Hypothetical ...    28   7.3  
AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = +1

Query: 304 RSQPTLRERLMAPAGPNAFXXXXXXXXXXXXXXXXXXCYYGSGVKPGT-LQESHLWPQYV 480
           R+ PTL+ERL+ P     F                   YYG   K  + LQ+S +WP YV
Sbjct: 50  RTGPTLKERLLGPTTGKPFVYGTYALAGASVFGVGALMYYGLVSKEQSILQKSAIWPSYV 109

Query: 481 KERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVTLGLMIGSGMVVRGM 660
           +ERI TTY Y+AGSL LTA S VA  R+ A++ L A  G MS+  T+  MI SGM+ R +
Sbjct: 110 RERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIASGMLARSI 169

Query: 661 EY 666
           +Y
Sbjct: 170 DY 171


>Z81118-9|CAM84694.1|  208|Caenorhabditis elegans Hypothetical
           protein T10G3.8 protein.
          Length = 208

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 238 NFVPRNYVVRNYAREPRTRVATRSQPTLRERLMAP 342
           + VP+N V +N + +PR RV TR  P+   +L  P
Sbjct: 119 SLVPKNEVKKNASPQPRVRVITRKSPSPLRKLSTP 153


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 126  KKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRT--SNKG- 296
            +  K C +   IN V  N+ ++L    N E   ++T  FC    CG   CT    S KG 
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312

Query: 297  RYTLTTHTSGE 329
                 +H SGE
Sbjct: 1313 MCQCDSHFSGE 1323


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 126  KKFKSC*NKRIINYVITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRT--SNKG- 296
            +  K C +   IN V  N+ ++L    N E   ++T  FC    CG   CT    S KG 
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312

Query: 297  RYTLTTHTSGE 329
                 +H SGE
Sbjct: 1313 MCQCDSHFSGE 1323


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 606  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 499
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 606  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 499
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 606  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 499
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 606  GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 499
            GHP IS      C C+ N+N T S S H  + D  +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961


>U21323-2|AAM22051.1|  155|Caenorhabditis elegans Hypothetical
           protein C45G9.6b protein.
          Length = 155

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 180 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKG 296
           V R  G  CN+ +   S   +CT  + G K+C  TSN G
Sbjct: 58  VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 180 VYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKG 296
           V R  G  CN+ +   S   +CT  + G K+C  TSN G
Sbjct: 58  VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 498 CFYTFFHILWPKVRFLKSTWFYPR 427
           C + F H+  P++ F++ TW + R
Sbjct: 190 CIHQFLHLTQPQILFVRKTWNHAR 213


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 396 SWTSCSVLLWLWGKTRYSSGISP 464
           SW S SVL WL G T   + ISP
Sbjct: 219 SWPSTSVLTWLDGSTSDYNNISP 241


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 690 CLAPKSRCVLHSSYYHARTNHQTQCDNNGHPSISCYQI*KCGCSENSNCTTSS 532
           C     +C+  S Y+ A    + +C + G     C Q  KC C  N NC +SS
Sbjct: 257 CDNTNGKCICKSGYHGALC--ENEC-SVGFFGSGCTQ--KCDCLNNQNCDSSS 304


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 690 CLAPKSRCVLHSSYYHARTNHQTQCDNNGHPSISCYQI*KCGCSENSNCTTSS 532
           C     +C+  S Y+ A    + +C + G     C Q  KC C  N NC +SS
Sbjct: 257 CDNTNGKCICKSGYHGALC--ENEC-SVGFFGSGCTQ--KCDCLNNQNCDSSS 304


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 690 CLAPKSRCVLHSSYYHARTNHQTQCDNNGHPSISCYQI*KCGCSENSNCTTSS 532
           C     +C+  S Y+ A    + +C + G     C Q  KC C  N NC +SS
Sbjct: 257 CDNTNGKCICKSGYHGALC--ENEC-SVGFFGSGCTQ--KCDCLNNQNCDSSS 304


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 690 CLAPKSRCVLHSSYYHARTNHQTQCDNNGHPSISCYQI*KCGCSENSNCTTSS 532
           C     +C+  S Y+ A    + +C + G     C Q  KC C  N NC +SS
Sbjct: 257 CDNTNGKCICKSGYHGALC--ENEC-SVGFFGSGCTQ--KCDCLNNQNCDSSS 304


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +3

Query: 171 ITNVYRSLGVQCNAESKIASTTKFCTEKLCGQKLCTRTSNKGRYTLTTHTSGETHGTCWT 350
           +TN    L + CN          +C ++ CG+  C  T+  G  T+T+       GTC +
Sbjct: 163 VTNCGNDLSI-CNTVGMQTFVNTYC-QRTCGR--CPSTTASGSVTVTS-------GTCTS 211

Query: 351 KCIQLGQGCISWS 389
                   C +WS
Sbjct: 212 YIADSSSNCAAWS 224


>AC199169-4|ABO33250.1|  275|Caenorhabditis elegans Hypothetical
           protein F38A1.10 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 636 FWHGSKRNGVHTWIWGLNN 692
           FW G  RN + +W+W   N
Sbjct: 86  FWIGLSRNNISSWVWDNGN 104


>AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical
           protein Y53H1A.2 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 435 KTRYSSGISPLATICERTYKNNIWIHRGFFGADCW*CSCCFQN 563
           KT+++    P     ER  K++I +HR      C  C  C+Q+
Sbjct: 166 KTKHNCPECPKKYTSERRLKHHIVVHRNPDAYKCQKCGYCYQS 208


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 273 CTRTSNKGRYTLTTHTSGETHGTCWTKCIQLGQGCISWSLCSWTSCSVLLWLWGK 437
           C RT  +   T T+ +   T GTC +        C SW+  +   C VL  L  K
Sbjct: 9   CQRTCGRCPSTTTSGSVTVTSGTCTSYIADSSSNCASWARTT-RFCVVLSLLLNK 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,329
Number of Sequences: 27780
Number of extensions: 366534
Number of successful extensions: 1156
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)