Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l02
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   117   6e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   117   6e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...   100   7e-22
07_03_1414 - 26403361-26403969                                         28   5.9  
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    28   5.9  
06_01_0820 + 6202348-6203313                                           27   7.7  
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033     27   7.7  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  117 bits (282), Expect = 6e-27
 Identities = 51/77 (66%), Positives = 62/77 (80%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81

Query: 384 KTTAKGLFKILEKYRPE 434
           K  A  LFK+L KYRPE
Sbjct: 82  KNLATNLFKMLLKYRPE 98


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  117 bits (282), Expect = 6e-27
 Identities = 51/77 (66%), Positives = 62/77 (80%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6   NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65

Query: 384 KTTAKGLFKILEKYRPE 434
           K  A  LFK+L KYRPE
Sbjct: 66  KNLATNLFKMLLKYRPE 82


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =  100 bits (240), Expect = 7e-22
 Identities = 45/77 (58%), Positives = 58/77 (75%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKRPK F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23  NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82

Query: 384 KTTAKGLFKILEKYRPE 434
           K       ++L++ + E
Sbjct: 83  KNLGCQKERLLKRAQAE 99


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 311 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 174
           L A +  P +  G++  + + +T  + L P LEE +    GL L+D
Sbjct: 77  LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 302 PHPASEGCTSASSESAPSDQP 364
           P PA E   +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


>06_01_0820 + 6202348-6203313
          Length = 321

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 354 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 241
           EG  S    V  SDAG GY +A    W  +   +CP Q
Sbjct: 170 EGFCSVRCGVHGSDAGAGYAYA----WVGNAERQCPGQ 203


>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
          Length = 160

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 175 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 279
           S  L PR L +L    +RRG R L +VRA S  V  PD
Sbjct: 13  SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,258
Number of Sequences: 37544
Number of extensions: 250600
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)