Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20l02
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   137   6e-33
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   125   2e-29
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   5e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   8e-22
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.020
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  137 bits (331), Expect = 6e-33
 Identities = 63/119 (52%), Positives = 79/119 (66%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 384 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 560
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LV
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLV 148


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  125 bits (302), Expect = 2e-29
 Identities = 63/119 (52%), Positives = 79/119 (66%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 384 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 560
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LV
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLV 128


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 5e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 384 KTTAKGLFKILEKYRPET 437
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 8e-22
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +3

Query: 204 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 383
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 479 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 360
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 352 LRSTNLPRHWTRLQLRA 402
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical
           protein Y19D10A.9 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 302 PHPASEGCTSASSESAPSDQPIYPDTG 382
           P   S G T       PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221


>AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical
           protein F56A4.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 302 PHPASEGCTSASSESAPSDQPIYPDTG 382
           P   S G T       PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 11  SNLFASAIFAESLVYDLGHVSFRGL 85
           ++LF  ++++  +VYD+ HV F GL
Sbjct: 717 NHLFIWSVYSPKVVYDMAHVIFFGL 741


>AF040660-8|AAN65288.1|  594|Caenorhabditis elegans Hypothetical
           protein W05G11.6d protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 548 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 417
           D VC   DGV P+  +  ++    F       FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159


>AF040660-6|AAN65286.1|  541|Caenorhabditis elegans Hypothetical
           protein W05G11.6b protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 548 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 417
           D VC   DGV P+  +  ++    F       FPGC + RP+++
Sbjct: 8   DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49


>AF040660-5|AAC71149.1|  651|Caenorhabditis elegans Hypothetical
           protein W05G11.6a protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 548 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 417
           D VC   DGV P+  +  ++    F       FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,341,477
Number of Sequences: 27780
Number of extensions: 200779
Number of successful extensions: 549
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)