Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k22
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 29 0.46
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 27 2.4
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.3
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 5.6
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 26 5.6
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 26 5.6
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 7.5
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 9.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.9
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 29.5 bits (63), Expect = 0.46
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 453 PHNEEQD*TVRRSCGNRRWECYTNGGALFNC 545
P+ ++++ + S G R W C TN G L+ C
Sbjct: 139 PYLDDKEFIIDISAGLRHWICVTNEGNLYGC 169
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 541 IATLNKKLVYELLSSRLIALNHYISFLQNEGKITELTDLLTML 669
I + +L ++ L S LI NH++SF + +I TDL M+
Sbjct: 358 IIYIQMQLCFDDLESYLIRRNHFLSFPLCKEQIQLHTDLFRMI 400
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = -3
Query: 662 VSKSVSSVIFPSFCRKLM*WFSAMSLEDNNSYTNFL 555
V K VS + F + ++L+ + + ++LED+++YTNF+
Sbjct: 182 VLKLVSQLSFMTDRKELV-YTTCLALEDDDAYTNFV 216
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 292 IPLMSLVTPKVLDLILLAQS-GKDPAQEQSQESPETVAVTLKRL 420
+PL LVTP + + I+LA++ G D + S E A + +L
Sbjct: 162 LPLTYLVTPNIPEAIVLAKNQGLDISNINSVSDMERCAAVIHKL 205
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 97 YQR*SLNMDDDDYWNTSDTKAKAFSFDDDVLSPQEILAIGQKTYPGQKE 243
Y+ LN DD ++ D + S +D +S E L+ + YP +KE
Sbjct: 160 YEHTHLNSRDDSNPSSCDRETFFLSDEDSEISLMEGLSSIENGYPDEKE 208
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 80 IQKSIYINMFTQHNYFSVFIHISNFF 3
+ K +Y+ +F NY++V IH +F
Sbjct: 221 LNKYVYLLLFGSVNYWTVLIHDGKYF 246
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 188 YLRKRSWLLGRKHIQ 232
Y RSWLL RKHI+
Sbjct: 91 YTILRSWLLSRKHIE 105
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 7.5
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = +1
Query: 292 IPLMSLVTPKVL-DLILLAQSGKDPAQEQ-SQESPETVAVTLKRLVLGRRCALHVHRTMK 465
+P M+ +VL ++ LLA D E S + + ++L+ L+L + + V R +K
Sbjct: 47 LPSMTSELVEVLIEVGLLAFKHDDSKSEFISPKMLKEAHLSLQALMLILKRSPTVLREIK 106
Query: 466 SKTELLDGAV--AIGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQ 624
S LLD + I I + LF KL+Y+L+S + + Y SF++
Sbjct: 107 SSVTLLDWILPRTISLFADIRFIKLFDSLKEFHKLIYQLISEKSFLWDLYASFMR 161
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 418 LVLGRRCALHVHRTMKSKT 474
+V GR CALH+ T++ T
Sbjct: 455 VVFGRACALHIKDTLEPNT 473
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 276 GEGCSDSINEFSYTQSFRF 332
G+GCSD I E Y + F +
Sbjct: 823 GDGCSDFIKELLYRRPFSY 841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,563
Number of Sequences: 5004
Number of extensions: 49241
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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