Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k22
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543...    29   3.3  
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159...    29   3.3  
03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702...    29   3.3  
12_02_0775 - 23049842-23051299                                         29   4.4  
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422...    28   7.7  
03_03_0141 + 14779557-14779600,14779686-14779749,14779827-147798...    28   7.7  
03_02_0352 + 7749902-7751788,7752547-7752615                           28   7.7  

>10_02_0114 +
           5431578-5431724,5432753-5432797,5433572-5433691,
           5433773-5433880,5434900-5435073,5435366-5435503,
           5435879-5435986,5436131-5436238,5436340-5436488,
           5437594-5437747,5437980-5438140,5438221-5438427,
           5438575-5438758,5438846-5438929,5439023-5439222,
           5439314-5439373,5439461-5439665
          Length = 783

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 517 ILTVVLFLIATLNKKLVYELLSSRLIALN-HYISFLQNE 630
           I+  V+FL AT+   LV E LS+ L AL  H++ F QN+
Sbjct: 724 IIGAVIFLFATIGVLLVMETLSAFLHALRLHWVEF-QNK 761


>06_02_0324 +
           14414422-14414541,14415271-14415347,14415807-14415994,
           14416276-14416373,14416633-14416766,14416852-14416953,
           14417931-14418038,14418335-14418465,14420068-14420142,
           14420439-14420518,14421229-14421320,14422333-14422634,
           14422717-14422856
          Length = 548

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 355 KDPAQEQSQESPETVAVTLKRLVLGRRCALHVHRTMKSKTELL 483
           +D AQE+   S   V V L+   +GR+  L  HR+  S ++ L
Sbjct: 451 RDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQAL 493


>03_05_0089 -
           20669197-20669280,20669944-20670030,20670143-20670261,
           20670838-20671076,20671159-20671215,20671564-20672195,
           20673172-20673213,20675849-20676133
          Length = 514

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 499 IGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQNEGKITE--LTDLLTML 669
           +G GN         + T++  ++  +L+  ++ L +YIS+L  EG++    + DL  +L
Sbjct: 346 LGAGNPKAAYFSVWVVTISCAIISAILAVVILCLRNYISYLFTEGEVVSNAVADLCPLL 404


>12_02_0775 - 23049842-23051299
          Length = 485

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 505 DGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQNEGKITEL 648
           DG+  L VV+F        L Y  L+ R+ +  H++SF+     I  L
Sbjct: 4   DGSPPLRVVIFPWLAFGHLLPYMELAERMASRGHHVSFVSTPRNIARL 51


>06_01_0588 -
           4224348-4224516,4224674-4224767,4224872-4225490,
           4225609-4225734,4225819-4226487,4226728-4226853,
           4226940-4227266,4227366-4227439,4228469-4228583,
           4228871-4229164
          Length = 870

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/70 (22%), Positives = 36/70 (51%)
 Frame = +1

Query: 316 PKVLDLILLAQSGKDPAQEQSQESPETVAVTLKRLVLGRRCALHVHRTMKSKTELLDGAV 495
           P++    L AQS +  +    + S    + +L  +++ +  A+   + ++ K + L    
Sbjct: 431 PQIDGATLSAQSKQITSTGHREVSSSDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTS 490

Query: 496 AIGDGNAILT 525
           ++G+GNAIL+
Sbjct: 491 SLGNGNAILS 500


>03_03_0141 +
           14779557-14779600,14779686-14779749,14779827-14779860,
           14780308-14780438,14780655-14780728,14780869-14780947,
           14781054-14781143,14781401-14781474,14782317-14782404,
           14782654-14782780,14782864-14782968,14783446-14783569,
           14783651-14783702,14784150-14784255,14784770-14784831,
           14784912-14784956,14785527-14785625,14785772-14785924
          Length = 516

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 266 LLELKMLSSFCPGYVFCPIAKISCGDNTSSSKL 168
           LLE+  LS+  P  V   + K SCGDNT  + L
Sbjct: 25  LLEIAALSTVVPAVVV--LRKWSCGDNTRKNSL 55


>03_02_0352 + 7749902-7751788,7752547-7752615
          Length = 651

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 154 KAKAFSFDDDVLSPQEILAIGQKTYPG 234
           + + F+FD +V  P++ L IG +  PG
Sbjct: 477 RIRKFNFDGNVCQPEDTLMIGNEEVPG 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,241
Number of Sequences: 37544
Number of extensions: 302798
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)