Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k22
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    55   4e-08
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p...    29   2.3  
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/91 (30%), Positives = 49/91 (53%)
 Frame = +1

Query: 388 PETVAVTLKRLVLGRRCALHVHRTMKSKTELLDGAVAIGDGNAILTVVLFLIATLNKKLV 567
           P T+  ++KR++ G    L  +R+++ KT+LL  AVA  D N I  +V+FL  TL + + 
Sbjct: 167 PLTIEASIKRMLQGHTVTLDYYRSLRDKTQLLKQAVATYDNNTIFKIVIFLERTLKENIF 226

Query: 568 YELLSSRLIALNHYISFLQNEGKITELTDLL 660
            +++  +  A   Y   LQ  G+  ++   L
Sbjct: 227 CKIMDGQKSACRVYTRHLQITGEWDKMNKFL 257


>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
            protein Y102A5A.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = +1

Query: 445  HVHRTMKSKTELLDGAVAIGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQ 624
            H H  +KS      GA+A+G+ N  L  +L  I T  KK  Y LL     AL   I +  
Sbjct: 899  HHHEDLKSAAAQALGALAVGNLNVYLPFILEQIRTQPKK-QYLLLH----ALKEVIVWES 953

Query: 625  NEGKITELTDL 657
            +  + T+ TDL
Sbjct: 954  SSEESTKSTDL 964


>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
            protein Y102A5A.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/71 (35%), Positives = 34/71 (47%)
 Frame = +1

Query: 445  HVHRTMKSKTELLDGAVAIGDGNAILTVVLFLIATLNKKLVYELLSSRLIALNHYISFLQ 624
            H H  +KS      GA+A+G+ N  L  +L  I T  KK  Y LL     AL   I +  
Sbjct: 899  HHHEDLKSAAAQALGALAVGNLNVYLPFILEQIRTQPKK-QYLLLH----ALKEVIVWES 953

Query: 625  NEGKITELTDL 657
            +  + T+ TDL
Sbjct: 954  SSEESTKSTDL 964


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 537 KEHHR*YSIPISYCHSSV*QFSLALHCA 454
           +EHH+ YS  ++    ++ QF+LA  CA
Sbjct: 659 QEHHQHYSFRVNGAFKNMPQFALAFECA 686


>Z81489-1|CAB04005.2|  266|Caenorhabditis elegans Hypothetical
           protein C55A1.1 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 602 FSAMSLE-DNNSYTNFLFNVAIKKSTTVSIAFPSPIATAPSNSSVLLFIVRC 450
           F A+++  D  +YT  LF   I  S   S   P+ +  A S   V+ F VRC
Sbjct: 132 FDAVNMTVDEVAYTGPLFYSTIDNSLRFSAILPAALQWASSLFLVIFFGVRC 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,204
Number of Sequences: 27780
Number of extensions: 276557
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)