Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k20
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 30 0.31
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.55
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 28 1.3
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.2
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 27 2.2
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 27 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 3.9
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 3.9
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 3.9
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 5.1
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.8
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 6.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 6.8
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 484 RNGFAKTKKPLKKSNQYTLDNCPDTLVCDTKGSNTDHFGLRQRRHSLP 627
RNG K K + ++Y D D+L C G +T+H + H +P
Sbjct: 247 RNGRRKGKTTFQPPSEYCHDEDMDSLHCLMSGYSTEHHTVDDLFHKVP 294
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 373 KKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGFAKTKKPLKKSNQYTLDNCP 552
+ +SP RS R SP + +SP + ++ P FA K P++ + +DN
Sbjct: 137 RSMSPRYRSRSRSPDGRSRSPDYD-RRSPKRNHRSPSPVSFAPQKSPVENETETNVDN-G 194
Query: 553 DTLVCDT 573
DT + ++
Sbjct: 195 DTKISES 201
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 355 PIPRNLKKISPVPEPRS-NYTPARKISPIQNLNKS 456
P+P N K VP+ RS +YTP R ++L S
Sbjct: 542 PLPSNFKDKGHVPQQRSVSYTPKRSSDTSESLQPS 576
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 571 YHRLMYQDSCPRYTGWIFLRVSSFLQSHFLLAL 473
Y RL D C + W+ + + F +S+F L+L
Sbjct: 645 YARLQINDMCVSWGLWLLVFGAKFTESYFFLSL 677
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 304 NSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKS 456
N+ +++H + + N+R+RP N SP E N +PA +S + +L S
Sbjct: 272 NAHWVVHNEGNRNRRERPCRSN--GSSPTSESALN-SPASSVSSLPSLGAS 319
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +1
Query: 415 PARKISPIQN---LNKSPVKGNQEPVRNGFAKTKK 510
P + P+ N LNK GN P++NG T K
Sbjct: 109 PKPQFEPVANSQVLNKDVNNGNNAPIKNGVKSTAK 143
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSN----YTPARKI-SPIQNLNKSPVKGNQ---EP 480
P P+ + P+P K PVP P S TP + SP N + SP + P
Sbjct: 1218 PVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAP 1277
Query: 481 VRNGFAKTKKPLKKSNQYT 537
R +++K ++ T
Sbjct: 1278 ARTSVSRSKSKAERHETST 1296
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 385 PVPEPRSNYTPARKISPIQNLNKSPVKGNQE 477
P+P TP ++ P ++ K V GN E
Sbjct: 580 PLPSSNDEQTPVKETIPFLHIRKKSVDGNWE 610
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 364 RNLKKISPVPEPRSNYTPARKISPIQNLNKSP 459
RNL + P+ N+ PA + SP+ ++SP
Sbjct: 335 RNLTVRAGTPQSSPNFNPAMRRSPVGAASRSP 366
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +1
Query: 289 ARKQENSDF---ILHPDPSWNQRKRPIPRNLKKISPVPEPRSNY 411
AR Q N D ++H +PSW + I + + + E + +Y
Sbjct: 192 ARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSY 235
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 379 ISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRN--GFAKTKK-PLKKSN 528
+SP P S T K S I + P++ + P + G ++ +K +KK+N
Sbjct: 210 VSPPSRPDSTSTTKSKTSSISSARARPIRASSRPTASKLGASRPQKLGIKKAN 262
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -3
Query: 272 LRRAAPVCSSKLLRSVSAFPAKSANQAILIYFLKALILRSFTLLVFSD 129
L R + C K S+S + + + Y+++ L+++S T +F+D
Sbjct: 238 LPRLSNDCDMKGRSSLSRTSSPVVEKKLKRYYIRVLLVQSITFFLFND 285
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/90 (22%), Positives = 37/90 (41%)
Frame = +1
Query: 283 VKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPV 462
V +R +N++ P +NQ+ +P+ S ++ P + I P+Q+
Sbjct: 351 VVSRSGQNNNQPAQPG-QYNQQSQPVQSYQSGQST-----QHFQPVQPIQPVQSTQYYQP 404
Query: 463 KGNQEPVRNGFAKTKKPLKKSNQYTLDNCP 552
+PV+NG +S QY + P
Sbjct: 405 SSPVQPVQNGVPAPPMQPVQSTQYYQPSSP 434
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 358 IPRNLKKISPVPEPRSNYTPAR-KISPIQNLNKSPVKGNQEPVRNGFAKTKKPLKKSNQY 534
+ ++ KK++P P P P++ I+P Q + ++P + P K +
Sbjct: 289 VAKSKKKVTPAPAPAPESEPSKPSIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSA 348
Query: 535 TLDNCPDT 558
T N T
Sbjct: 349 TPANVETT 356
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 301 LVYVPSQHCDCVGLLLFARLNY*EVSQLFQLSP 203
++ V + HCD V L +L E ++ LSP
Sbjct: 270 IIAVTNTHCDIVTSFLLKKLQILEAPKVIDLSP 302
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 430 SPIQNLNKSPVKGNQEPVRNGFAKTKKPLKKSNQYTLDN-CPDTLVCDTKGSNTDHFGLR 606
+P+++ +K K +P+ N A+ +++ ++D+ P +L + + + G
Sbjct: 572 APVESTSKEEDKDVPDPIANAMAELSSSMRRRQSTSVDDEAPVSLSKTSSSTRLNGLGYH 631
Query: 607 QRRHSL 624
R S+
Sbjct: 632 SRNTSI 637
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,547
Number of Sequences: 5004
Number of extensions: 54305
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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