Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k20
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0039 - 7621613-7622695 34 0.080
05_03_0040 - 7646525-7647775 32 0.32
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 32 0.32
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 32 0.43
07_03_0091 + 13312904-13313647 30 1.7
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142... 29 3.0
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 29 4.0
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 29 4.0
07_03_0089 - 13300902-13301645 29 4.0
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956... 29 4.0
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 28 5.3
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 28 5.3
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 28 7.0
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 9.2
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 27 9.2
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 27 9.2
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 27 9.2
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 27 9.2
>05_03_0039 - 7621613-7622695
Length = 360
Score = 34.3 bits (75), Expect = 0.080
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 322 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSP-VKGNQEP 480
HP+P + +P+P K P PEP+ + P + P L+ P K + EP
Sbjct: 177 HPEPKPEPKPKPVPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHPEP 230
Score = 30.7 bits (66), Expect = 0.99
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 435
P+P + +P P+ K+ P PEP+ + P K+ P
Sbjct: 200 PEPKPHPEPKPEPKPEPKLHPKPEPKPHPEPEPKLKP 236
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 435
P+P + P P+ K P PEP+ + P K P
Sbjct: 114 PEPKPEPKPYPEPKPKPKPEPKPEPKPEHKPEPKPEP 150
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 322 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGFAK 501
HP+P + P P + P PEP+ P K P PV +P+ + K
Sbjct: 227 HPEPEPKLKPEPKPEPKPEPEPKPEPKPEPKPEPKPYPKPKPEPKPVP-KPKPIPHPGPK 285
Query: 502 TK-KP 513
K KP
Sbjct: 286 PKPKP 290
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 322 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPV 462
HP+P + P P+ K P PEP+ P K+ P P+
Sbjct: 299 HPEPKPHPMPEPEPK--PKPEPKPEPKPYPEPKPKLKPEPKPGPKPI 343
>05_03_0040 - 7646525-7647775
Length = 416
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +1
Query: 322 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGFAK 501
HP+P + +P P+ K P PEP+ P K P P K EP K
Sbjct: 345 HPEPKPEPKPQPEPKPEPKPEPKPEPKPEPKPEPKPYPEPKPEPKP-KPKPEPKPEAPPK 403
Query: 502 TKKP 513
KP
Sbjct: 404 KHKP 407
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 322 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 435
HP+P +P P+ K P PEP+ P K P
Sbjct: 197 HPEPEPKPEPKPEPKPEPKPEPKPEPKPKPKPEPKPKP 234
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 322 HPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 435
HP+P +P P+ + P PEP+ P K P
Sbjct: 181 HPEPEPKPEPKPEPKPHPEPEPKPEPKPEPKPEPKPEP 218
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 355 PIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGFAKTKKPLKKSNQ 531
P PR ++ SP P P T R+ +N +S +G +EP + +T+K +++ Q
Sbjct: 337 PAPRRGRRKSPSPSPPKAKTTRRRTK--KNTQESDSEGEEEPPKRRGRRTRKSKQEAEQ 393
>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 31.9 bits (69), Expect = 0.43
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +1
Query: 202 ADLAGKAETLLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKI 381
AD KA LL+ E G+A N + ++EN+ L PS + K P+ L +
Sbjct: 1058 ADSRAKAPDLLSGDIESPGSANGNES-----QEENAGSSLDA-PSNDSEKSAPPKRLART 1111
Query: 382 SPVPEPR-----SNYTPARKISPIQNLNKSPV 462
P P S++TP R SP +N +PV
Sbjct: 1112 LSSPSPTKASSISSFTPRRMPSPSRNRPSTPV 1143
>07_03_0091 + 13312904-13313647
Length = 247
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPAR-KISPIQNLNKSPVKGN 471
P+PS N + P P+ + P PEP+ P++ K+ P+ V GN
Sbjct: 198 PEPSPNPKPNPNPKPEPQPDPKPEPKPQPEPSQPKLPPLSPAIAIIVPGN 247
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSP 459
P P Q +P P+ K SP P+P+ P K P N P
Sbjct: 84 PQPEPKQDPQPNPQPDPKQSPQPDPKPTPQPNPKQDPQPNPQPDP 128
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 435
P+PS N + P P + SP P+P N P + P
Sbjct: 182 PEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDP 218
>10_06_0114 -
10911713-10911724,10913642-10913772,10913869-10914229,
10914339-10915081,10918916-10918964,10919063-10919334,
10919426-10919519,10919618-10920000,10920504-10920575,
10920656-10920778,10920875-10921048,10921115-10921579,
10921662-10921839
Length = 1018
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Frame = +1
Query: 226 TLLNNLDEQTGAALRNHNVVKARKQENSDFILH--PDPSWNQRKRPIPRN---LKKISPV 390
T N ++ + G +ARK+ ++ H P P + +R I + +K S +
Sbjct: 27 TPCNEVENKKGETSSKKREYRARKKVEANNPYHEVPIPDKHIAERNIKQREYRARKNSVI 86
Query: 391 PEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGFAKTKKPLKKSNQY 534
+ + TPA+ P ++ + GN +P + + ++ +K ++Y
Sbjct: 87 EDAHNPITPAKPTEPTACVSVNHETGNSQPTKMSNEQREERNRKQHEY 134
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 314 KSEFSCLRAFTTL*LRRAAPVCSSKLLRSV--SAFPAKSANQAILIYFLKA 168
+ E + LRA+TTL L ++ + +++L S+ + PA N A ++ +L A
Sbjct: 274 QKEPTILRAYTTLCLSKSGTLHKNQILTSLKGAGLPANEDNAAAMLRYLNA 324
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 314 KSEFSCLRAFTTL*LRRAAPVCSSKLLRSV--SAFPAKSANQAILIYFLKA 168
+ E + LRA+TTL L ++ + +++L S+ + PA N A ++ +L A
Sbjct: 283 QKEPTILRAYTTLCLSKSGTLHKNQILTSLKGAGLPANEDNAAAMLRYLNA 333
>07_03_0089 - 13300902-13301645
Length = 247
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSP 459
P+P + P P +P PEP+ + P K P +L K P
Sbjct: 190 PEPKPEPKPEPSPNPKPNPNPKPEPQPDPKPEPKPQPEPSLPKPP 234
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSP 459
P P Q +P P+ K SP P+P+ P K P N P
Sbjct: 84 PQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPDPKQDPQPNPQPDP 128
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 435
P+PS N + P P + SP P+P N P + P
Sbjct: 182 PEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDP 218
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSP-VKGNQEPVRN 489
P P+ Q +P P+ K +P P+P+ + P + SP + +P K EP N
Sbjct: 132 PQPNPKQDPQPNPQPDPKPTPQPDPKQDPQPNPQPSPKADPKPNPKPKPQPEPSPN 187
>02_02_0379 +
9565001-9565515,9565553-9565833,9565884-9566084,
9566253-9566309,9566955-9567019,9567199-9567420
Length = 446
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 325 PDPSWNQRKRPIPRNLKKISPVPEP 399
PDPSW + +P P L++ SP P P
Sbjct: 384 PDPSWERPLKPHP--LREPSPTPHP 406
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +1
Query: 352 RPIPRNLKKISPVPEPRSNYTPA--RKIS-----PIQNLNKSPVKGNQEPVRNGFAKTKK 510
+P PR K PV P S TP+ R+ S P + +++PVK P R A +
Sbjct: 37 KPTPRRKPKAPPVAAPMSPVTPSSVRRSSRLLETPTKVTSETPVKPTPTPKRKRAAPSPS 96
Query: 511 P 513
P
Sbjct: 97 P 97
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 349 KRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKS 456
KRP P+ L + P P+P + PA+ +P +L +S
Sbjct: 8 KRPPPQPLPRRPPPPKPSAESKPAKARAPATSLLES 43
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 391 PEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGFAKTKKP 513
P PR+N +P SP+ N ++SP GN + G +++ +P
Sbjct: 281 PSPRNNGSP----SPMDNGSRSPRDGNGDGGSRGGSRSPRP 317
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 289 ARKQENSDFILHPD-PSWNQRKRPIPRNLKKISPVPEPRSNYTPARK 426
A + + F L P PSW P + L P P S TP R+
Sbjct: 171 AASRSSPPFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTLTPPRR 217
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = +1
Query: 304 NSDFILHPD--PSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQE 477
N DF + D Q +PRN +K + V PR + + NL +S KGN
Sbjct: 294 NDDFTMREDFLKECAQWFTVLPRNSEKNTQV-FPRKFFNIVDPLKQSNNLGRSVSKGNFL 352
Query: 478 PVRNGF----AKTKKPLKKSNQYTLD 543
+R+ F K K L+ + +T+D
Sbjct: 353 RIRSAFDFGARKLGKILQVPDNFTVD 378
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 463 KGNQEPVRNGF--AKTKKPLKKSNQYTLD 543
+G P R+GF A TK+PLK N Y L+
Sbjct: 172 QGKAHPERSGFDGAWTKEPLKFDNSYFLE 200
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 421 RKISPIQNLNKSPVKGNQEPVRNGFAKTKKPLKKSNQYTLDNCPDTLVCDTKGSN 585
R P + KS +GN P + +T KP K N Y ++ C GSN
Sbjct: 127 RHTRPWSSCTKSSNRGNFHP--SSILQTSKPDKTRNSYPVEILEALQSCKQPGSN 179
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +1
Query: 364 RNLKKISPVPEPRSN---YTPARKISPI--QNLNKSPVKGNQEPVRNGFAKTKKPLKKSN 528
R L I P+ R N P + +S + +N SP+ G+ + R +KP K +
Sbjct: 120 RALMAIKPLYAQRQNGQPQNPEQDMSFVIPSTVNVSPLNGHPQNTRQ-----RKPRKSTR 174
Query: 529 QYTLDNCPD 555
++ D CPD
Sbjct: 175 TFSDDGCPD 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,015
Number of Sequences: 37544
Number of extensions: 324220
Number of successful extensions: 1190
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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