Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k18
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical...    28   3.4  
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine re...    27   7.8  

>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 272 RFPHIDNNSNM--ATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSI 445
           RFPH D+ S+M  A   F +  S G PLI    +  + +   +  K ++ +L G M  ++
Sbjct: 11  RFPHSDSTSSMMLANLTFGNMRSKGTPLILVPGLFGTKENWIQVGKDLSQRL-GCMVFAV 69

Query: 446 DNEYYYTF 469
           +N  + +F
Sbjct: 70  ENRNHGSF 77


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 183 PTTHRLTTRLEQCFKKPILKISTTIHRLC 97
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical
           protein C38C3.7 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = -3

Query: 208 WRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKT-LTMYNERI--RAALN 38
           W  +I+++ N+ P      T+F++  FE+ +     +++++  T  T+ N +I  R AL+
Sbjct: 311 WISIIVSIDNSEPPSPQKFTVFKRMGFEDCETVEDFIWHVENSTKKTVKNAKIERRLALH 370

Query: 37  RPAR-FND 17
           + +R F D
Sbjct: 371 KVSRKFKD 378


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 122 FRLQYTDCVQFKNKNFNNVQRENKSCSQQTRSI*RSNDQ 6
           F+ QY   +Q   KNF+  Q++ K+  ++ +S  ++ +Q
Sbjct: 312 FKKQYAQDMQVHEKNFDQQQKQLKAMKKEGKSAKQAEEQ 350


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
           protein E03G2.2 protein.
          Length = 1503

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 298 AVVVNMWESIRWQILNGDEIE 236
           +V+V +W+ ++W+IL G  I+
Sbjct: 299 SVIVTLWQIMKWEILGGSFIK 319


>AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 7 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 101 NRCIVVEIFKIGFLKHCSKRVVKRCVVGHIY 193
           N  I+ ++   GF  HCS R+V   +  H Y
Sbjct: 57  NVIIIFQVHWFGFFLHCSNRIVLHTIDLHNY 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,215
Number of Sequences: 27780
Number of extensions: 259928
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)