Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k13
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...   206   1e-53
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...   206   1e-53
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    40   0.002
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    40   0.002
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    40   0.002
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      40   0.002
Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical pr...    35   0.043
Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical p...    31   0.70 
Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical...    30   1.2  
AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein...    30   1.2  
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    30   1.6  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    29   2.1  
Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81058-10|CAE17776.1|  136|Caenorhabditis elegans Hypothetical p...    29   3.8  

>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score =  206 bits (502), Expect = 1e-53
 Identities = 95/141 (67%), Positives = 109/141 (77%)
 Frame = +1

Query: 226 VPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNEX 405
           +PSRARVYA+VN  RPREYWDYE+++++WG  +DYQLVRKLGRGKYSEVFE   ++ +E 
Sbjct: 4   IPSRARVYAEVNPSRPREYWDYEAHMIEWGQIDDYQLVRKLGRGKYSEVFEGFKMSTDEK 63

Query: 406 XXXXXXXXXXXXXXXXXXXXLENLRGGTNIISLQAVVKDPVSRTPALIFEHVNNTDFKQL 585
                               LENLRGGTNII+L  VVKDP+SRTPALIFEHVNN+DFKQL
Sbjct: 64  VVVKILKPVKKKKIKREIKILENLRGGTNIITLLDVVKDPISRTPALIFEHVNNSDFKQL 123

Query: 586 YSTLSDYDIRYYLYELLKALD 648
           Y TLSDYDIRYYLYELLKALD
Sbjct: 124 YQTLSDYDIRYYLYELLKALD 144


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score =  206 bits (502), Expect = 1e-53
 Identities = 95/141 (67%), Positives = 109/141 (77%)
 Frame = +1

Query: 226 VPSRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNEX 405
           +PSRARVYA+VN  RPREYWDYE+++++WG  +DYQLVRKLGRGKYSEVFE   ++ +E 
Sbjct: 4   IPSRARVYAEVNPSRPREYWDYEAHMIEWGQIDDYQLVRKLGRGKYSEVFEGFKMSTDEK 63

Query: 406 XXXXXXXXXXXXXXXXXXXXLENLRGGTNIISLQAVVKDPVSRTPALIFEHVNNTDFKQL 585
                               LENLRGGTNII+L  VVKDP+SRTPALIFEHVNN+DFKQL
Sbjct: 64  VVVKILKPVKKKKIKREIKILENLRGGTNIITLLDVVKDPISRTPALIFEHVNNSDFKQL 123

Query: 586 YSTLSDYDIRYYLYELLKALD 648
           Y TLSDYDIRYYLYELLKALD
Sbjct: 124 YQTLSDYDIRYYLYELLKALD 144


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
 Frame = +1

Query: 304 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE----XXXXXXXXXXXXXXXXXXXXXLE 471
           + +G  E Y+ + KLG G Y+ VF   +I  N+                         L 
Sbjct: 320 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLR 379

Query: 472 NLRGGTNIISLQAVVKDPVSRTPALIFEHVNNTDFKQLYSTLSD----YDIRYYLYELLK 639
           NLR   N+++L  ++     R   L+FE+V+  D KQ   + ++     +IR +LY+LL+
Sbjct: 380 NLR-HANVVTLHDIIH--TDRLLTLVFEYVDR-DLKQYMDSCNNAMQMNNIRLFLYQLLR 435

Query: 640 AL 645
            L
Sbjct: 436 GL 437


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
 Frame = +1

Query: 304 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE----XXXXXXXXXXXXXXXXXXXXXLE 471
           + +G  E Y+ + KLG G Y+ VF   +I  N+                         L 
Sbjct: 353 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLR 412

Query: 472 NLRGGTNIISLQAVVKDPVSRTPALIFEHVNNTDFKQLYSTLSD----YDIRYYLYELLK 639
           NLR   N+++L  ++     R   L+FE+V+  D KQ   + ++     +IR +LY+LL+
Sbjct: 413 NLR-HANVVTLHDIIH--TDRLLTLVFEYVDR-DLKQYMDSCNNAMQMNNIRLFLYQLLR 468

Query: 640 AL 645
            L
Sbjct: 469 GL 470


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
 Frame = +1

Query: 304 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE----XXXXXXXXXXXXXXXXXXXXXLE 471
           + +G  E Y+ + KLG G Y+ VF   +I  N+                         L 
Sbjct: 230 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLR 289

Query: 472 NLRGGTNIISLQAVVKDPVSRTPALIFEHVNNTDFKQLYSTLSD----YDIRYYLYELLK 639
           NLR   N+++L  ++     R   L+FE+V+  D KQ   + ++     +IR +LY+LL+
Sbjct: 290 NLR-HANVVTLHDIIH--TDRLLTLVFEYVDR-DLKQYMDSCNNAMQMNNIRLFLYQLLR 345

Query: 640 AL 645
            L
Sbjct: 346 GL 347


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
 Frame = +1

Query: 304 VDWGNQEDYQLVRKLGRGKYSEVFEAINITNNE----XXXXXXXXXXXXXXXXXXXXXLE 471
           + +G  E Y+ + KLG G Y+ VF   +I  N+                         L 
Sbjct: 230 IGFGKLETYEKLDKLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLLR 289

Query: 472 NLRGGTNIISLQAVVKDPVSRTPALIFEHVNNTDFKQLYSTLSD----YDIRYYLYELLK 639
           NLR   N+++L  ++     R   L+FE+V+  D KQ   + ++     +IR +LY+LL+
Sbjct: 290 NLR-HANVVTLHDIIH--TDRLLTLVFEYVDR-DLKQYMDSCNNAMQMNNIRLFLYQLLR 345

Query: 640 AL 645
            L
Sbjct: 346 GL 347


>Z35637-6|CAA84685.1|  341|Caenorhabditis elegans Hypothetical
           protein C03C10.1 protein.
          Length = 341

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 328 YQLVRKLGRGKYSEVFEAINITNNE 402
           Y+L+RK+G G + +++ +IN+TN E
Sbjct: 16  YKLIRKIGSGSFGDIYVSINVTNGE 40


>Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical
           protein W02B12.12b protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 325 DYQLVRKLGRGKYSEVFEAINITNN 399
           D     KLGRGKYS+V++A +  NN
Sbjct: 93  DLDTSNKLGRGKYSKVYKAFDRNNN 117


>Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical
           protein W02B12.12a protein.
          Length = 367

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 325 DYQLVRKLGRGKYSEVFEAINITNN 399
           D     KLGRGKYS+V++A +  NN
Sbjct: 93  DLDTSNKLGRGKYSKVYKAFDRNNN 117


>AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 322 EDYQLVRKLGRGKYSEVFEAINITNNE 402
           E +QLVR +G G  + V+E I+ TNN+
Sbjct: 480 EKFQLVRLIGDGNTAVVYEVIDKTNND 506


>AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical
           protein Y79H2A.11 protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 322 EDYQLVRKLGRGKYSEVFEAINITNNE 402
           E +QLVR +G G  + V+E I+ TNN+
Sbjct: 480 EKFQLVRLIGDGNTAVVYEVIDKTNND 506


>AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein
           protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 322 EDYQLVRKLGRGKYSEVFEAINITNNE 402
           E +QLVR +G G  + V+E I+ TNN+
Sbjct: 480 EKFQLVRLIGDGNTAVVYEVIDKTNND 506


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 322 EDYQLVRKLGRGKYSEVFEAINITNNE 402
           ED+QL++ LG+G Y +VF+    T ++
Sbjct: 81  EDFQLLKVLGKGGYGKVFQVRKTTGSD 107


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
           protein T28B8.3a protein.
          Length = 1838

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 505 QAVVKDPVSRTPALIFEHVNNTDFKQLYSTLSDY 606
           + + K+  SR  ++IF+ VN+T  K+L+  L DY
Sbjct: 596 ETIFKNGFSRLISVIFDRVNDTMRKRLFDRLFDY 629


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/26 (38%), Positives = 21/26 (80%)
 Frame = +1

Query: 322 EDYQLVRKLGRGKYSEVFEAINITNN 399
           +DY+L++++G G Y EV++A +I ++
Sbjct: 13  DDYELLQRVGSGTYGEVYKARDIRSD 38


>Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical
           protein C46F11.5b protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 305 LTGATKKTISWFASWV 352
           +  AT++T+SWF SW+
Sbjct: 137 IASATRRTVSWFGSWI 152


>Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical
           protein C46F11.5a protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 305 LTGATKKTISWFASWV 352
           +  AT++T+SWF SW+
Sbjct: 137 IASATRRTVSWFGSWI 152


>Z81058-10|CAE17776.1|  136|Caenorhabditis elegans Hypothetical
           protein F11E6.10 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 621 VVSYIII*QCRI*LFKVSIVHMFKYKCRCTRDRVFDYSL 505
           V+S II   C   +F + I  M+ Y+  CTR  VF++ L
Sbjct: 33  VISVIIPVFCFFLMFGIVIFMMYVYRRLCTRSLVFEHIL 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,923
Number of Sequences: 27780
Number of extensions: 222635
Number of successful extensions: 648
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)