Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k13
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.48 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 496 ISLQAVVKDPVSRTPALIFEH--VNNTDFKQLYSTLSDYD 609
           I   A+   P+ ++P + F +   N TD   +Y TL+D+D
Sbjct: 64  IGADALWLSPIYKSPQVDFGYDISNFTDVDPVYGTLADFD 103


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +1

Query: 481 GGTNIISLQAVVKDPVS--------RTPALIFEHVNNTDFKQLYSTLSDYDIRY 618
           G   ++SL     DPV+        +  ALI    ++  F +L S   DYD +Y
Sbjct: 185 GNGGLVSLVVQAMDPVNTIVYMADDKGDALIVYQNSDESFHRLTSNTFDYDPKY 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,025
Number of Sequences: 438
Number of extensions: 2906
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)