Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k11
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   4.3  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   4.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.6  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   10.0 

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 36/136 (26%), Positives = 52/136 (38%)
 Frame = -3

Query: 659 PCQVTSAVSFPSCPKTTQA*SSDKARCTSCLPNT*QPAVTANATPKQSNLLPVKKL*IDC 480
           P   T+  +  S P T+   +S     +S  P T  P  T N T   S L     +    
Sbjct: 549 PLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPN 608

Query: 479 KCARSL**LRVNEFQTTSATFLTKSLVA*APLRSFASTPVRMRLTNRS*SERTSSHSIHG 300
             + S    +V+   TT  T  + S V        +ST + +  TNR+ +  TSS SI  
Sbjct: 609 STSSSS--TQVSWNSTTPITGTSTSKVT-------SSTSIPLTSTNRTSTTFTSSTSIST 659

Query: 299 NFILTKLFECKFTSLS 252
           +   T      F S S
Sbjct: 660 SSSSTATSSTSFASES 675


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 634 PFHLVQKLPRHDLQTKRDVRLVYPIL 557
           PF LV+ LP+ + ++K+D  L++  L
Sbjct: 76  PFLLVRYLPKLEFESKKDTGLIFSAL 101


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 639 RFLSILSKNYPGMIFRQSEMYV 574
           ++LS L K YP M+FR  E+ V
Sbjct: 43  QYLSNLEKRYPIMVFRNDEITV 64


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 181 EADLALFSIIVGAVENNLTNIKIGDKDVNLHSNNFVKMKFPCIEWDEVRSLHERFVNLM 357
           + DLA F+I + ++ NNL ++    K   +  N   +    C+  D   ++H+  ++L+
Sbjct: 255 DEDLASFAISLSSIMNNLKHLCSRSKS-RVWGNESWEKVLVCVVIDGRNTVHQNVLDLL 312


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 266 FTSLSPILIFVKLFSTAPTIMENNAKSAS 180
           FT  +PIL  + LFST   IM ++   AS
Sbjct: 78  FTQKNPILASLFLFSTDKDIMNSSLNPAS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,447
Number of Sequences: 5004
Number of extensions: 50759
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)