Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k11
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0982 - 29914146-29914187,29914839-29915168                       29   3.4  
02_01_0498 - 3614621-3614674,3614780-3617161                           29   4.5  
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124...    28   5.9  
08_02_0297 + 15469370-15469834,15470644-15470696,15471058-154711...    28   7.8  

>04_04_0982 - 29914146-29914187,29914839-29915168
          Length = 123

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 332 SERTSSHSIHGNFILTKLFECKFTSLSPILIFVKLFSTAPTIMENNAKSASLSLRSCFSN 153
           S RTSS +++G  I +   +   T+L+      ++  T P+  +NN  S  L++ S F +
Sbjct: 19  SSRTSSSAVNGGSISSGAADS--TTLARSTTARRIHLTTPSCFDNNDDSGRLAVLSSFDD 76

Query: 152 KSHTFCMPSIG 120
                  P  G
Sbjct: 77  NDRYLVAPRHG 87


>02_01_0498 - 3614621-3614674,3614780-3617161
          Length = 811

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 343 FVNLMRTGVDAKLLSGAYATRDLVKKVADVVWNSLTRSYYKDRAHLQSIYSF 498
           + NL+ + + A+ +  A A  D + + +   WN+L   Y ++  H  +I  F
Sbjct: 354 YSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELF 405


>09_02_0565 +
           10710770-10711003,10711368-10711527,10712277-10712477,
           10712564-10712628,10712740-10712767,10712847-10712923,
           10713023-10713109,10713572-10713622,10713857-10713937,
           10714125-10714346,10714424-10714517,10714608-10714748,
           10716383-10716444,10716519-10717106
          Length = 696

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 409 LVKKVADVVWNSLTRSYYKDRAHLQSIYSFLTGNKLDCFGVAFAVTAG 552
           +++KVA+ +W +   SY+     ++  +  + G+ +  FG AF    G
Sbjct: 57  ILRKVANFLWQTDGNSYHHVWPEMELGWQIVLGSLIGFFGAAFGSVGG 104


>08_02_0297 +
           15469370-15469834,15470644-15470696,15471058-15471149,
           15471515-15471598,15471782-15471876,15474036-15474345,
           15474465-15474549,15474802-15474955,15475200-15475541
          Length = 559

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 301 PCIEWDEVRSLHERFVNLMRTGVDAKLLSGAYATRDLVKKVADVVWNSL--TRSYYKDRA 474
           PC++ DE   L E   +L RTG  A+LL  A      + ++   +  +L   +    DR 
Sbjct: 433 PCLKDDEYVHLTEYAWDLWRTGRSAELLDAALRNEARIAEITSCIQIALLCVQKDPADRP 492

Query: 475 HLQSIYSFLTGNKL 516
            +  + + L   K+
Sbjct: 493 SMLDVLAMLRDEKI 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,857
Number of Sequences: 37544
Number of extensions: 298790
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)