Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k10
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    75   1e-15
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    75   1e-15
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    75   1e-15
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    41   2e-05
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   2.4  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    23   4.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   4.1  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    23   5.4  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   5.4  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    23   7.2  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    22   9.5  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    22   9.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    22   9.5  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 74.9 bits (176), Expect = 1e-15
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
           P  RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 196 PRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 74.9 bits (176), Expect = 1e-15
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
           P  RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 196 PRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 74.9 bits (176), Expect = 1e-15
 Identities = 31/44 (70%), Positives = 38/44 (86%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
           P  RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 196 PRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 41.1 bits (92), Expect = 2e-05
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPHGGGNHQHIG 73
           P VRG AMNP +HPHGGG  + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 142 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTV 44
           G ASS+  + A    SS  +GSL Y    TTTV
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHY--KTTTTV 469


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPHGGGNHQHIGKASTVK 91
           PY R V +   E PH G  +  +  A T++
Sbjct: 55  PYFREVVLMSFECPHCGFKNAQVQHAETIQ 84


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPH 46
           P +RG  M PVEH H
Sbjct: 200 PRLRGQFMEPVEHNH 214


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 221 FLQIFNRLNNKFRSP 177
           F  +F+RL N FR+P
Sbjct: 239 FTTLFDRLGNSFRAP 253


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 215 QIFNRLNNKFRSPSLYRSCLHESF 144
           ++   +NNKFR+ S Y   ++  F
Sbjct: 151 RVITLINNKFRTTSKYNQIINNIF 174


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 83  WKPYLYVDGYHHRED 39
           + PYL   GY HR D
Sbjct: 648 FSPYLLASGYSHRLD 662


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 126 IRPTLRPADVPLLT 85
           ++P +RP +VPL+T
Sbjct: 363 VQPYIRPLEVPLVT 376


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 71  LYVDGYHHREDALQG 27
           L  + +HHR DAL G
Sbjct: 231 LLANAWHHRADALTG 245


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 97  SSLDSGSLTYMLMVTTTVRML 35
           S L   SLT+ L+++TT+  L
Sbjct: 358 SKLQMTSLTFFLLISTTILTL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,675
Number of Sequences: 5004
Number of extensions: 11853
Number of successful extensions: 38
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)