Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k10
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                       81   1e-16
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656...    29   0.67 
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    27   2.7  
09_02_0240 - 6157855-6157891,6158040-6158329                           26   3.6  
03_02_0620 + 9916684-9917336,9919219-9919492,9920502-9920585,992...    25   6.2  
02_02_0289 - 8606357-8607277                                           25   6.2  
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460           25   8.2  
02_05_0271 + 27342468-27343577                                         25   8.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 36/44 (81%), Positives = 38/44 (86%)
 Frame = +2

Query: 2   PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
           P VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLIAA
Sbjct: 197 PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240


>01_01_0841 -
           6564029-6564348,6564654-6564686,6564793-6565450,
           6565530-6565694,6565789-6565878,6565982-6566182,
           6566525-6566737,6566835-6567077
          Length = 640

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 14  GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 121
           G+A N    PHG  NHQH       ++ T++  K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -2

Query: 171 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 46
           V   PP + P  R A  P L+P   P       P+   LPPP
Sbjct: 702 VGFAPPPLQPPARPAQHPHLQPPARPAQQPPRPPVTQPLPPP 743


>09_02_0240 - 6157855-6157891,6158040-6158329
          Length = 108

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 157 STNPSGPASSNKTNFATSRCSSLDSGSLT 71
           ST    PA++ +T++  + CSS  +G++T
Sbjct: 21  STGGQPPAAAAQTDYCATACSSSSNGTVT 49


>03_02_0620 +
           9916684-9917336,9919219-9919492,9920502-9920585,
           9921295-9921356,9921699-9921762
          Length = 378

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 157 STNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTT 47
           S + +G A+ N++  A +   ++D+G    +++VTTT
Sbjct: 68  SLHATGGAAVNRSLLAQAAAGAVDAGPQPLLVVVTTT 104


>02_02_0289 - 8606357-8607277
          Length = 306

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  NPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
           +PV      GNH     AS + + TS G+K+   AA
Sbjct: 76  SPVASSERQGNHVLQNNASMISKSTSDGQKMETAAA 111


>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
          Length = 515

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 41  PHGGGNHQHIGKASTVKRGTSAGRKVG 121
           P+GGGNH   GK     +G   G  +G
Sbjct: 322 PNGGGNHPAQGKKGGGGQGGGVGGPMG 348


>02_05_0271 + 27342468-27343577
          Length = 369

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 5   YVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSA 106
           ++RG++M   EH  GGG+  H    + +K  +S+
Sbjct: 329 FMRGMSMARGEHHGGGGSDMHGTLEAEMKSASSS 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,649,179
Number of Sequences: 37544
Number of extensions: 93556
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)