Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k10
(226 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 81 6e-16
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 81 6e-16
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 81 6e-16
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 81 6e-16
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 81 6e-16
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 81 6e-16
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 81 6e-16
BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 81 6e-16
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 81 6e-16
AB046769-1|BAB13375.2| 1865|Homo sapiens KIAA1549 protein protein. 28 6.2
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein.
Length = 211
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 151 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 194
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/44 (81%), Positives = 38/44 (86%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHP GGGNHQHIGK ST++R AGRKVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 240
>AB046769-1|BAB13375.2| 1865|Homo sapiens KIAA1549 protein protein.
Length = 1865
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 180 SFFVSVLPPRILPVLRAAIRPTLRPADVPLLT 85
S FVS P LP + P+L P +VPL T
Sbjct: 779 SLFVSEATPFPLPTELTVVGPSLTPTEVPLNT 810
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,190,183
Number of Sequences: 237096
Number of extensions: 498514
Number of successful extensions: 1184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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