Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k10
(226 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 83 2e-17
Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 25 5.5
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 25 5.5
AF003142-10|AAK73885.1| 338|Caenorhabditis elegans Hypothetical... 25 5.5
AF003142-9|AAB54184.1| 348|Caenorhabditis elegans Hypothetical ... 25 5.5
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 25 7.2
U29096-3|AAA68407.1| 961|Caenorhabditis elegans Uncoordinated p... 25 7.2
AF034085-1|AAD01976.1| 961|Caenorhabditis elegans UNC-45 protein. 25 7.2
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 25 9.6
AL110485-18|CAB60366.1| 108|Caenorhabditis elegans Hypothetical... 25 9.6
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 25 9.6
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 83.4 bits (197), Expect = 2e-17
Identities = 37/44 (84%), Positives = 39/44 (88%)
Frame = +2
Query: 2 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 133
P VRGVAMNPVEHPHGGGNHQHIG STV+R SAG+KVGLIAA
Sbjct: 197 PRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAA 240
>Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical
protein C29F7.2 protein.
Length = 394
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 156 PRILPVLRAAIRPTLRPADVPLLTVEALPIC 64
P LPV+ AAI+ + A VP++ +E C
Sbjct: 121 PLHLPVIYAAIKAEDKEAPVPVIVMEMFEDC 151
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 183 VSFFVSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC 64
+++ VSVL I+P + A IR +PL T PIC
Sbjct: 522 IAYHVSVLLYPIMPTISATIREQCGLPALPLFT--PFPIC 559
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 26 NPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 118
+P H HG +H HIG+ S + R + KV
Sbjct: 773 SPRHHRHG--DHSHIGRQSPLARELTTNGKV 801
>AF003142-10|AAK73885.1| 338|Caenorhabditis elegans Hypothetical
protein F57C9.1b protein.
Length = 338
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 130 SNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYI 5
+N T+ T C G++T++ + V+ L + +GNTT++
Sbjct: 113 NNYTHVLTGYC-----GNVTFLQKIADVVKDLKKKNGNTTFV 149
>AF003142-9|AAB54184.1| 348|Caenorhabditis elegans Hypothetical
protein F57C9.1a protein.
Length = 348
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 130 SNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYI 5
+N T+ T C G++T++ + V+ L + +GNTT++
Sbjct: 123 NNYTHVLTGYC-----GNVTFLQKIADVVKDLKKKNGNTTFV 159
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 162 LPPRILPVLRAAIRPTLRPADVPLLTVEALP 70
+P ++ + A +PTL P +P+LT P
Sbjct: 764 VPLPVVQTTQTAPKPTLPPTTLPVLTTNKTP 794
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 157 STNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVR 41
S+ PS P+S+ T+ T S+ S S T TTT++
Sbjct: 674 SSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQ 712
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 157 STNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVR 41
S+ PS P+S+ T+ T S+ S S T TTT++
Sbjct: 674 SSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQ 712
>U29096-3|AAA68407.1| 961|Caenorhabditis elegans Uncoordinated
protein 45 protein.
Length = 961
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 56 NHQHIGKASTVKRGTSAGRKVGLIAA 133
N + G KRG A K GLI A
Sbjct: 919 NQERAGSTEQAKRGLEAAEKFGLIKA 944
>AF034085-1|AAD01976.1| 961|Caenorhabditis elegans UNC-45 protein.
Length = 961
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 56 NHQHIGKASTVKRGTSAGRKVGLIAA 133
N + G KRG A K GLI A
Sbjct: 919 NQERAGSTEQAKRGLEAAEKFGLIKA 944
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 224 FFLQIFNRLNNKFRSPSLYRSCLH 153
F +F++LN+KFR YR LH
Sbjct: 3315 FANSVFDKLNSKFRPFLSYRHRLH 3338
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 224 FFLQIFNRLNNKFRSPSLYRSCLH 153
F +F++LN+KFR YR LH
Sbjct: 3315 FANSVFDKLNSKFRPFLSYRHRLH 3338
>AL110485-18|CAB60366.1| 108|Caenorhabditis elegans Hypothetical
protein Y46G5A.23 protein.
Length = 108
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 38 HPHGGGNHQHIG 73
H HGGG H+H G
Sbjct: 79 HRHGGGGHRHGG 90
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 157 STNPSGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNT 14
+ NP G ++S T +T SS + S T V TTV GNT
Sbjct: 940 TANP-GSSTSGPTIASTQGSSSTQTNSNTGSTTVATTVTQGSSTEGNT 986
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,532,836
Number of Sequences: 27780
Number of extensions: 70051
Number of successful extensions: 209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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