Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k06
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    64   2e-11
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    44   2e-05
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    28   1.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   1.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.7  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   9.9  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 32/82 (39%), Positives = 47/82 (57%)
 Frame = +3

Query: 60  IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 239
           + VG  LP   L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 240 KSDGVAEIVCVSVNDPYVMAAW 305
            + G++ I  V+VND +V  AW
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAW 79


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 27/87 (31%), Positives = 46/87 (52%)
 Frame = +3

Query: 60  IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 239
           I+VGD +P   L  D     + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 240 KSDGVAEIVCVSVNDPYVMAAWGAQHN 320
           ++    E++ +S +      A+  + N
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQN 129


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 114 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 284
           NK  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C    D
Sbjct: 28  NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -2

Query: 580 KHFTIKQACIQFRGYNKYY 524
           +++T +QACI + G++K+Y
Sbjct: 418 RYYTYQQACIPYDGFHKHY 436


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 254 NSIRFQFICVLYVSRQVCFRASRG 183
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 374 QENDVNNIFLSRNYLSFGVVLSSPSRHHIRVINRHA 267
           + ND  N  L R++LS    L    R H    N HA
Sbjct: 403 ENNDFWNRMLHRSHLSTMAALHKSQRSHDLAANEHA 438


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 266 HYFSNSIRFQFICVLYVSRQVCFRASRGEG 177
           H+   S+RF+ +  LY    VC   S  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,231
Number of Sequences: 5004
Number of extensions: 57185
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)