Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k06
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0691 - 5167260-5167937                                          104   6e-23
06_03_0811 + 24830496-24831194                                        104   7e-23
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048    101   7e-22
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911...    79   2e-15
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    42   4e-04
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545...    30   1.9  
06_01_0671 - 4899611-4899829,4900870-4901448                           30   1.9  
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652...    29   2.6  
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507...    28   5.9  
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500...    28   7.8  

>02_01_0691 - 5167260-5167937
          Length = 225

 Score =  104 bits (250), Expect = 6e-23
 Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
 Frame = +3

Query: 12  RASARALHISQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAVPGA 179
           RA+ R+   +   +A I VGD+LP A L    PA+     V + ELTAG+K VLFAVPGA
Sbjct: 47  RAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGA 106

Query: 180 FTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW 305
           FTP CS+ HLPG+++ A +L + GV  I CVSVND +VM AW
Sbjct: 107 FTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAW 148


>06_03_0811 + 24830496-24831194
          Length = 232

 Score =  104 bits (249), Expect = 7e-23
 Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 4/101 (3%)
 Frame = +3

Query: 15  ASARALHISQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAF 182
           A  RA+  S  + A I VGD+LP A L + DSP  +   V + +LTAGKKVVLFAVPGAF
Sbjct: 56  APRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAF 115

Query: 183 TPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW 305
           TP C++ H+PG+V  A +L++ GV  + CVSVND +VM AW
Sbjct: 116 TPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAW 156


>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
          Length = 162

 Score =  101 bits (241), Expect = 7e-22
 Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
 Frame = +3

Query: 51  MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 221
           MAP+ VGD LP   L  F+ +    +V++  L AGKKVVLF VPGAFTP CS  H+PG++
Sbjct: 1   MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60

Query: 222 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH 317
             A++LK+ GV +I+ VSVNDP+VM AW   +
Sbjct: 61  NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSY 92


>01_01_1148 -
           9113728-9113835,9113952-9114035,9114831-9114992,
           9115120-9115224,9115584-9116216,9117412-9117496,
           9118426-9118520,9119083-9119241,9119968-9119997,
           9120100-9120306
          Length = 555

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 32/61 (52%), Positives = 42/61 (68%)
 Frame = +3

Query: 144 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 323
           GKKVV+F +PGA+T  CS+ H+P Y  N DKLK+ GV  ++CVSVNDPY +  W  +   
Sbjct: 70  GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129

Query: 324 K 326
           K
Sbjct: 130 K 130


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +3

Query: 9   NRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTP 188
           +  SA+A   S ++M  + +GD +P  +L  DS   K+ I +      V+LF+ PG FTP
Sbjct: 23  HETSAKAAQ-SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTP 79

Query: 189 GCSK--THLPGYVQNADK 236
            C+     + GY +  DK
Sbjct: 80  VCTTELAAMAGYAKEFDK 97


>08_01_0627 +
           5451140-5451839,5452635-5452662,5452730-5452786,
           5453205-5453874
          Length = 484

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 231 LRSVRIPASVF*SIPG*RRPAPQIIQPSFPPSTHKYSLY*RENLRINQQQAADPRP 64
           LR  +  A++    P   +P PQ+  PSFP +T   S   R   R  +    DP+P
Sbjct: 13  LRDAQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68


>06_01_0671 - 4899611-4899829,4900870-4901448
          Length = 265

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +3

Query: 48  SMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 227
           S   +  G   P   L  D     V++ +   G+ VV++  P   TPGC+K     +  +
Sbjct: 114 SSVQVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDS 170

Query: 228 ADKLKSDGVAEIVCVSVND 284
            +K K  G AE++ +S +D
Sbjct: 171 YEKFKKAG-AEVIGISGDD 188


>06_01_0861 +
           6527279-6527582,6527619-6527719,6527817-6528042,
           6528132-6528475,6528624-6528989,6529080-6529347,
           6529479-6529696
          Length = 608

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 165 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 323
           A+ G   P C   H+    +   K +S  V   V   +   YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193


>06_03_1406 -
           29949367-29949556,29949753-29949837,29950625-29950791,
           29951232-29952049
          Length = 419

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 36  ISQLSMAPIKVGDQLPAADLFEDSPANKVN-ICELTAGKKVVLFAVPGA 179
           +S   +AP+++G   P++ +   SPA  V+         + VL  +PGA
Sbjct: 32  LSMADLAPVQIGPSSPSSPMSPASPATPVDAYANAPPPSEDVLLRIPGA 80


>08_02_1430 -
           27048055-27048408,27049674-27049841,27049927-27050042,
           27050153-27050305,27050850-27050993,27051052-27051211,
           27051332-27051970
          Length = 577

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 208 KCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAG 80
           K VLEHP +K   TA N +   AV +++    A     K A G
Sbjct: 362 KQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,624
Number of Sequences: 37544
Number of extensions: 356220
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)