Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20k06
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    28   5.3  
U88170-8|AAB42244.1|  345|Caenorhabditis elegans Serpentine rece...    27   9.2  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   9.2  
AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical...    27   9.2  
AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 441 LIHFALSIFWYLNVNISH*KFYT 373
           ++HF  ++FWYLN+N S   FY+
Sbjct: 613 IVHF-FTLFWYLNINDSSMHFYS 634


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 187 GVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTL 62
           G    G+  N  F P    ++  LLAGE++ KS +G  S  L
Sbjct: 104 GNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFL 145


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 247 SDFSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 134
           +DF   A C+   K   EH G + P     T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 292 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 203
           T GS++ T  + +   D S    CT+PG C
Sbjct: 17  TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46


>U88170-8|AAB42244.1|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein49 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 416 FGTSMLIYLIENFTQENDVNNIFLSRNYLSFG 321
           F TS+  Y   N+T+ +++ +IF +  +LSFG
Sbjct: 3   FPTSLQDYYATNYTRCSELFSIFSTSEFLSFG 34


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 192 IPG*RRPAPQIIQPSFPPS 136
           +P   RPAPQ +QPSF P+
Sbjct: 294 VPQPVRPAPQPVQPSFQPA 312


>AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 529 YYNVTVNPMSVLKTRGSNKMVVTGSIDICFNTFRIINILVPQC*YISLKIL 377
           YY + +N   +LK + S   + TG+    +N F  IN L  QC    +KI+
Sbjct: 278 YYEIGINDAQMLKQKSSGITICTGTGSTSWN-FN-INKLTEQCVQDLMKIV 326


>AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10b protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 529 YYNVTVNPMSVLKTRGSNKMVVTGSIDICFNTFRIINILVPQC*YISLKIL 377
           YY + +N   +LK + S   + TG+    +N F  IN L  QC    +KI+
Sbjct: 339 YYEIGINDAQMLKQKSSGITICTGTGSTSWN-FN-INKLTEQCVQDLMKIV 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,107
Number of Sequences: 27780
Number of extensions: 325401
Number of successful extensions: 746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)