Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k05
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 29 0.63
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.5
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.4
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.4
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 5.9
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 7.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.8
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 7.8
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 29.1 bits (62), Expect = 0.63
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 72 PHNLVEPQSDVGNKLIENLIVYVPTDDDRLYIDKKQFPKF--NSVLVYRHE 218
P++L+EP + L ++V DD+++ D+K F S++ Y HE
Sbjct: 246 PNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCFEDRSIIGYIHE 296
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 587 GNVHHGEDIVVETHFLHLSISQTARAL 667
GN+HH D ET +HL+IS A A+
Sbjct: 195 GNLHHAGDHEEETVHIHLTISLFASAI 221
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 30 FQIQVCISDRFFAFPHNLVEPQSDVGNKLIENLIVY 137
F ++ I D FP NL++ S + +EN + Y
Sbjct: 403 FSFRLSIHDNSICFPFNLIQELSSLQQLFVENALPY 438
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 72 PHNLVEPQSDVG-NKLIENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRS 245
P N + QS V NK +++++ +D+ + P +SVL +HE+ V ID ++
Sbjct: 499 PENAIALQSSVPENKAEDSVVLKSSVPEDK---SEDSVPSKSSVLEDKHENSVEIDKKA 554
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 96 SDVGNKLIENLIVYVPTDDDRLYIDK-KQFPKFNSV 200
SDV + LI+ L+V P DRL +D+ Q P FN +
Sbjct: 336 SDVASDLIKKLLVLDP--KDRLTVDEIHQHPFFNGI 369
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 498 SNLRPIACEIPLSHFKELVESNDFLLCFNLET 593
+NL + CEIP+ F+ VE + LL F ET
Sbjct: 920 ANLIELICEIPVCMFEPTVELSPILL-FQYET 950
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 303 EIGAGETRVFSVLLTNNLFYCNTMIIQH 386
E+ + R+FS + L YCNT+I H
Sbjct: 439 ELDFEKQRLFSACIEVYLSYCNTLIFLH 466
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 567 FLLCFNLETSTMVKILSLK-RIFCIF 641
FLL F L T+ ++ILSL FC+F
Sbjct: 23 FLLTFFLLTTCQLRILSLSINAFCVF 48
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 466 ATVKAFRLQ*KAICDRLLVKFRCLILKSWWKAMTFYYVSIWKRPPW 603
+T+ AF L + D +L+ F +L SW +++SI + PW
Sbjct: 212 STIGAFDLDPNKVLDLILLLFSENLLDSW-----RFFLSILRNSPW 252
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -2
Query: 659 GLFAILKDAKNAFQRQYLHHGG---RF-QIET**KVIAFHQLFKMRQRNFTSNRSQIAFY 492
G+ A + K + L++GG F ++T V+ + L RQR T N + I+F
Sbjct: 32 GIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDY--LPAERQRGITINSAAISFT 89
Query: 491 WRRNALTV 468
WR + +
Sbjct: 90 WRNQRINL 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,829
Number of Sequences: 5004
Number of extensions: 62290
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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