Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k01
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 33 0.29
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.51
11_06_0610 - 25449085-25453284 31 0.67
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.67
04_04_1125 + 31085106-31085714 29 2.7
02_04_0452 + 23044190-23045227 29 2.7
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 3.6
12_02_0329 + 17585046-17585561 29 4.7
04_01_0041 - 464695-464850,467485-469029 29 4.7
01_05_0227 - 19512866-19514983 29 4.7
08_02_0875 + 22103903-22106293 28 6.2
07_01_0544 + 4012457-4012796,4012897-4013069 28 8.3
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 28 8.3
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 28 8.3
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 8.3
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 528 PPSPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPYXKEFAPGLKPPLSSEAPSA 695
P SP+ S TS + S ++PT+P TS + +P +P +PG P S +PS+
Sbjct: 1747 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSS 1805
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 522 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 635
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 0.67
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPYXKEFAPGLKPPLSSE 683
PP+P A+S P HTP+ P+ T S +P TP K +P PP + E
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLT-SISINPLTPYXKEFAPGLKPPLSSE 683
PP+P A+S P HTP+ P T +P TP + +P PP + E
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP---PPPAPE 700
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 540 AISATSTRSSNPRFHTPTTP 599
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>04_04_1125 + 31085106-31085714
Length = 202
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Frame = +3
Query: 420 LTFVGLLLTSQLKEAMCWXXXXXXXXXXXXXXXCIKPP---SPAISATSTRSSNPRFHTP 590
L L L++QL A C PP +PA T P TP
Sbjct: 11 LLLAALALSAQLAPAAATWCGSNCPTTKPPPPPCQPPPPTPTPATPTTPPTPWTPPPATP 70
Query: 591 TTPDLTSISINPLTPYXKEFAPG--LKPPLSSEAPS 692
T P T + P TP P PP + APS
Sbjct: 71 TPPTPTPWTPTPATPPPTPATPATPTTPPTPAPAPS 106
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 475 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 597
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 656
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
>12_02_0329 + 17585046-17585561
Length = 171
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 559 VDVAEIAGEGGLMHKGETANSNARG*RGGQHIASFNCDVSSSPTKVNCDGYFEARGG 389
V VA+ +G+G K TA S G GG+ A++ C + C G+ +GG
Sbjct: 91 VIVADASGDGSAAPKSGTAGSTHPGPEGGRSAAAWLCRSHNH----RCHGHGGGKGG 143
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 239 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 415
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 416 TVD 424
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 456 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 364
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>08_02_0875 + 22103903-22106293
Length = 796
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 656
P+P ++A S R NP+ PDL + +N L + P
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGP 547
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +3
Query: 519 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 656
C P + S ++ P TPTTP T P TP AP
Sbjct: 102 CKVQTPPVSNCKSGAAAPPAGQTPTTPAGTGSKATPATPVGSGVAP 147
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 588 PTTPDLTSISINPLTPYXKEFAPGLKPPL 674
P TP SI+ P PY K P L+PPL
Sbjct: 294 PQTPPRPSIASIP--PYQKPLKPSLRPPL 320
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 572 SPIPYTNHPRLNIHFHQSPDAVLXGIRAGVKASVV 676
S I N +IHF S +A+ G+RAG+ S++
Sbjct: 174 SKIKLVNDLLESIHFIASIEAMFLGVRAGIHPSII 208
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLT 608
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,222
Number of Sequences: 37544
Number of extensions: 399865
Number of successful extensions: 1468
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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