Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20k01
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 34 0.43
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 34 0.43
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 34 0.43
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 33 1.3
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 33 1.3
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 33 1.3
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 3.0
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 3.0
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 3.0
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 3.0
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 3.0
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 3.0
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 3.0
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 3.0
AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens ... 31 5.3
AF086921-1|AAP97151.1| 526|Homo sapiens D-myo-inositol-3-phosph... 31 5.3
BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein. 30 7.0
AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein. 30 7.0
AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X menta... 30 7.0
AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X menta... 30 7.0
AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interactin... 30 7.0
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 34.3 bits (75), Expect = 0.43
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 522 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPLSSE 683
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 34.3 bits (75), Expect = 0.43
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 522 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPLSSE 683
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 235
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 34.3 bits (75), Expect = 0.43
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 522 IKPPSPAISATSTRSSNPRFHTPTTPDLTS----ISINPLTPYXKEFAPGLKPPLSSE 683
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 656
P+PA+S TST SS P T TT TS++ TP ++ P
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTP 306
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 656
P+PA+S TST SS P T TT TS++ TP ++ P
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTP 306
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 32.7 bits (71), Expect = 1.3
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAP 656
P+PA+S TST SS P T TT TS++ TP ++ P
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTP 310
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AK127507-1|BAC87013.1| 130|Homo sapiens protein ( Homo sapiens
cDNA FLJ45600 fis, clone BRTHA3020369. ).
Length = 130
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 508 SRPYASSHPPLRSRLHQPDHQIPDSIHQPPQ 600
S P++S HP + +H Q P + QPPQ
Sbjct: 99 SLPHSSIHPSIHPSIHPSFIQTPSGLSQPPQ 129
>AF086921-1|AAP97151.1| 526|Homo sapiens D-myo-inositol-3-phosphate
synthase protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.3
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = -2
Query: 474 ASTLPP-STVTSAVVQQRSTVTGILR--LGAEGKTTASRLTRYASR*PFMME 328
A +PP S V +A+ +QRS + ILR +G+ +TT S T+++++ P E
Sbjct: 465 APLVPPGSPVVNALFRQRSCIENILRACVGSRHRTTCSWNTKWSAQGPASSE 516
>BC117331-1|AAI17332.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.3 bits (65), Expect = 7.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXKEFAPGLKPPLSSEAPS 692
PS A ++TS R+S P TPT TP T I LTP G P + + AP+
Sbjct: 10 PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67
>AY324825-1|AAP85542.1| 346|Homo sapiens selenoprotein V protein.
Length = 346
Score = 30.3 bits (65), Expect = 7.0
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 531 PSPAISATSTRSSNPRFHTPT-----TPDLTSISINPLTPYXKEFAPGLKPPLSSEAPS 692
PS A ++TS R+S P TPT TP T I LTP G P + + AP+
Sbjct: 10 PSSARTSTSVRASTPT-RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67
>AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 7.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAP 689
PP P S+ S P + + S+ P P+ + PG +PP +++P
Sbjct: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 7.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAP 689
PP P S+ S P + + S+ P P+ + PG +PP +++P
Sbjct: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interacting
protein 1 protein.
Length = 495
Score = 30.3 bits (65), Expect = 7.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 528 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGLKPPLSSEAP 689
PP P S+ S P + + S+ P P+ + PG +PP +++P
Sbjct: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,052,342
Number of Sequences: 237096
Number of extensions: 1978797
Number of successful extensions: 6258
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6243
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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