Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j22
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 31 0.11
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.46
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 1.1
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 1.8
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 1.8
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 27 1.8
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 26 2.4
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 2.4
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 26 3.2
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 3.2
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 3.2
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 25 4.3
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 25 4.3
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 25 4.3
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 4.3
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 25 5.6
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib... 25 5.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 7.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 24 9.8
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 24 9.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 24 9.8
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 24 9.8
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 30.7 bits (66), Expect = 0.11
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 115 SSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEIL 294
S DY YE Y ++ A + E ++++ +PD VK F + F E+L
Sbjct: 430 SGSDYT---YEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFGYWPAFSFYDELL 486
Query: 295 NLYENTFPTLTEKYFENTP 351
L N +P K + +TP
Sbjct: 487 KLLRNKYP----KVYSSTP 501
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.46
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +1
Query: 172 STEHYEPEYDRSSYYKMPDMVKKFL---VYFRNMINEGVTYEILNLYENTFPTLTEKYFE 342
S E + + + + + D+V + + V I+ G YE++NL ++ +T+ +
Sbjct: 397 SNEIQKQWHKKDDFTEYEDIVHELIELPVVCAQSIDGGCVYEVINLVQSVLRRVTKLFQL 456
Query: 343 NTPWPDEDEVSPIVD 387
PW D+ +D
Sbjct: 457 KEPWKLSDDSQEKID 471
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 184 YEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTY 285
+E YD S + DM KK L+ FRN +G+ Y
Sbjct: 327 FEDAYDIISKLSVSDMKKKLLIRFRN--EDGLDY 358
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -1
Query: 232 PCQAFYNKKTCHIPARSVLWTVLHSRHRIRNLPHYNRRWNTWLLIE 95
PC+A N CHI R+ W R P Y NT L IE
Sbjct: 59 PCKAVLNPY-CHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIE 103
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 181 VLWTVLHSRHRIRNLPHYNRRWN 113
+L H+R I +LPH+ RRW+
Sbjct: 407 ILQLATHNRSFICSLPHFLRRWS 429
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 26.6 bits (56), Expect = 1.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 267 NHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAIGFVTSLIIIVAGIHG 106
NH + KEFL+H ++ + R + LV F ++ VT + + I G
Sbjct: 14 NHFSDDQKEFLNHAKYRVKRNTIFGMLVGFSLPLYLARNKKVTPIRLYATSIIG 67
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 2.4
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 160 YEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYF 339
++ E+Y Y +S + P + + +R + G + L+ ++ L
Sbjct: 374 FDVWDREYYTARYKQSLINQKPSL-NPSITNYRRFFSVGTVIQGLSRLFSSLYGLRFVPA 432
Query: 340 ENTP---W-PDEDEVSPIVDNDNVFMILYQELYYR 432
+ +P W PD ++V+ +ND+V ++Y +L+ R
Sbjct: 433 DISPGEVWHPDVNKVNVYNENDHVMGVIYFDLFAR 467
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 259 NMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVD 387
+MI+ + + LNL +T LT ++E + + D+D V+ +++
Sbjct: 795 SMISANLMNDSLNLKVSTIFALTRIFYEFSDYIDDDYVNAVLE 837
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 109 MYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSY 213
M+ +D + GG + D++++ + Y P D SY
Sbjct: 19 MFGADTGSIGGITNMRDFQSRFADRYNPVTDTYSY 53
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 3.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 334 YFENTPWPDEDEVSPIVDNDNVFM 405
YF++ W D+D +SP + N+ M
Sbjct: 451 YFKDDSWMDDDYISPCMTTYNLTM 474
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.2
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +1
Query: 178 EHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWP 357
+ Y +Y ++ Y + F+V F+++ + +LN N F L ++ E+ P
Sbjct: 50 DRYTMQYQEATQYSIV-----FVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLEDRQVP 104
Query: 358 DEDEVSPI 381
+E EV +
Sbjct: 105 NEAEVEKL 112
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = -2
Query: 327 SECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFIIRRPVI 196
++CG G+L + L+ ++ H + D H + PV+
Sbjct: 681 TQCGSGVLTDDDGLVVALWLTHYGEQTSRGTDVKYHLGLASPVV 724
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 262 MINEGVTYEILNLYENTFPTLTEKYFENTPWPD 360
+I +G TY + L+ P L +K EN P D
Sbjct: 41 LIIKGETYHLHALFLGRSPVLLQKLIENNPKGD 73
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 136 GGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKK 240
G Y+S D+ P Y + ++YK ++V K
Sbjct: 217 GAYKSPDDFPEGDFRRKAPRYQKENFYKNLELVTK 251
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 343 NTPWPDEDEVSPIVDNDNVFMIL--YQELY 426
N W + +E++PIV DN+ L Y+ LY
Sbjct: 396 NFHWDESNELTPIVAVDNMLQKLDKYERLY 425
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 5.6
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 253 FRNMINEGVTYEILNLYEN-TFPTLTEKYFENTPWPDEDEVSPIVDNDNVFMILYQELY- 426
F N I G + +EN TF + +K EN+P P++ + P + M+L +Y
Sbjct: 269 FINNIYFGFSLSDAMKFENETF--IAKKILENSPCPNQPSIQPF----GILMMLVSTIYG 322
Query: 427 -YRDIY 441
++++Y
Sbjct: 323 NFKNLY 328
>SPBC29A3.02c |his7||phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
His7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 418 LGIGS*IHYHCPQ*VRPHLHLAKVYFQSISQ*VWGRYSHRGSGSHMLHLH*SCCE 254
LGI + Y + V L +QS + +W + + G+ H++H+ C E
Sbjct: 220 LGIALGLVYSSKESVAESLKTGTGVYQSRKRGLWYKGASSGAVQHLIHIDVDCDE 274
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 7.4
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Frame = +1
Query: 205 SSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTF------PTLTEKYFENTPWPDED 366
SSY K+ + KKFL++ + T LN + F P + + PW +
Sbjct: 728 SSYAKLGNSQKKFLIWCFKVAELDDTLYPLNTVDTDFSKDILIPKVARRGLSQLPWALQS 787
Query: 367 EVSPI 381
SP+
Sbjct: 788 YPSPL 792
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 259 CESKQG-IS*PCQAFYNKKTCHIPARSVL 176
CESK G I + FY KTC + + S L
Sbjct: 92 CESKCGHIFRKGEVFYRCKTCSVDSNSAL 120
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 250 YFRNMINEGVTYEILNLYENTFPTLTEKYFENTPW 354
YFR++ G+ Y L Y + F + YF N W
Sbjct: 78 YFRDLQWWGLDYPPLTAYVSWFFGIIGHYFFNPEW 112
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 190 ARSVLWTVLHSRHRIRNLPHYNRRWNTW 107
A SVLW VLH +RI L Y + N W
Sbjct: 173 ADSVLWDVLH--YRIPTLDGYQQH-NLW 197
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 151 RIRNLPHYNRRWNTWLLIESNSIHTLE 71
RIR++ + RRW W +N H ++
Sbjct: 266 RIRSVSDFERRWKLWRSRLANLRHVVK 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,752
Number of Sequences: 5004
Number of extensions: 40271
Number of successful extensions: 153
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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