Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j22
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical p... 86 1e-17
U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical p... 86 1e-17
AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical ... 51 4e-07
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 33 0.075
U97403-9|AAB52469.1| 389|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical ... 28 2.8
U80028-8|AAN73866.1| 378|Caenorhabditis elegans Serpentine rece... 28 3.7
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 27 6.5
Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical pr... 27 6.5
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 27 6.5
AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical ... 27 6.5
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 27 6.5
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 27 6.5
AF068713-17|AAC17790.1| 155|Caenorhabditis elegans Hypothetical... 27 8.6
AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain fami... 27 8.6
>U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical
protein C17G10.9a protein.
Length = 537
Score = 86.2 bits (204), Expect = 1e-17
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +1
Query: 220 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDN- 396
+P+ V +LVYF M++E EIL LY+ FP LTE++F + WPDE+ V I+ N
Sbjct: 32 VPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRDRMWPDENVVERIIGPGNK 91
Query: 397 VFMILYQELYYRDIYARVPGGP 462
+F+ILY+ELYYR +YAR GP
Sbjct: 92 LFIILYKELYYRQLYARNTRGP 113
>U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical
protein C17G10.9b protein.
Length = 535
Score = 86.2 bits (204), Expect = 1e-17
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +1
Query: 220 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDN- 396
+P+ V +LVYF M++E EIL LY+ FP LTE++F + WPDE+ V I+ N
Sbjct: 30 VPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDLTERFFRDRMWPDENVVERIIGPGNK 89
Query: 397 VFMILYQELYYRDIYARVPGGP 462
+F+ILY+ELYYR +YAR GP
Sbjct: 90 LFIILYKELYYRQLYARNTRGP 111
>AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical
protein C03H5.5 protein.
Length = 558
Score = 51.2 bits (117), Expect = 4e-07
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 217 KMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDN 396
K D+V ++L +F MI E EI N Y + T+ ++ + WPDE V + +N
Sbjct: 93 KATDIVLEYLAHFSKMIAENNLLEIQNCYYDRLETVQKQLPPSFTWPDEITVRKSISPEN 152
Query: 397 V-FMILYQELYYRDIYA 444
FM+LY+EL YR + A
Sbjct: 153 QDFMVLYKELKYRRLNA 169
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.075
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 142 YESYGDYEAQSTEHYEPEYDRSSY 213
YESYG Y+ HY+P Y SY
Sbjct: 43 YESYGKYDDHKDSHYQPSYYHDSY 66
>U97403-9|AAB52469.1| 389|Caenorhabditis elegans Hypothetical
protein T10E9.1 protein.
Length = 389
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 94 ILLTTMYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSY 213
ILL + +DD +E ++Y DY+ +++P+YD Y
Sbjct: 330 ILLGLPHFADDSSEYD-DNYDDYDNDEDSNFDPDYDYERY 368
>AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical
protein Y48G10A.3 protein.
Length = 343
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 181 HYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFP 318
H+ YDR S PD+V+++ V+F+++ N E + Y P
Sbjct: 195 HFGRNYDRCS----PDIVRQYRVFFQHLPNPNSLAEFIESYIQRTP 236
>U80028-8|AAN73866.1| 378|Caenorhabditis elegans Serpentine
receptor, class w protein118 protein.
Length = 378
Score = 27.9 bits (59), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 160 SRHRIRNLPHYNRRWNTWLLIESNSIHTL 74
+RH + L Y+RR +TWL++ I TL
Sbjct: 113 NRHLLHLLKDYSRRCSTWLMVFIALIRTL 141
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 295 NLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNVF 402
N Y+ FP+ +K + P D DE PIVD D+ F
Sbjct: 106 NEYQQ-FPSRPQKRLVDPPIVDLDEEPPIVDLDDSF 140
>Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical
protein K03D3.1 protein.
Length = 319
Score = 27.1 bits (57), Expect = 6.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 183 VFCGLCFIVAIGFVTSLIIIVAGIH 109
+ C LCF +A+ F+ +L ++ H
Sbjct: 95 LICALCFAIAVVFIFTLYLLTEAFH 119
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 295 NLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNVF 402
N Y+ FP+ +K + P D DE PIVD D+ F
Sbjct: 106 NEYQQ-FPSRPQKRLVDPPIVDLDEEPPIVDLDDSF 140
>AF099922-1|AAK21410.2| 509|Caenorhabditis elegans Hypothetical
protein F56F11.5 protein.
Length = 509
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 166 AQSTEHYEPEYDRSSYY 216
AQ T+ YE EY+ +SYY
Sbjct: 452 AQLTKEYEKEYENNSYY 468
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 330 LSECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAI 151
L C + + + V TF+ V V EF V +F ++ L VF GLC + I
Sbjct: 1225 LESCLQHMFVPVYHGAISTFLGVVMLVFSEFDFVVTYFFYTMTLLVALGVFNGLCVLPVI 1284
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 330 LSECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAI 151
L C + + + V TF+ V V EF V +F ++ L VF GLC + I
Sbjct: 1222 LESCLQHMFVPVYHGAISTFLGVVMLVFSEFDFVVTYFFYTMTLLVALGVFNGLCVLPVI 1281
>AF068713-17|AAC17790.1| 155|Caenorhabditis elegans Hypothetical
protein T24A6.2 protein.
Length = 155
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 250 YFRNMINEGVTYEILNLYENTFPT 321
+++N ++G YEI ++ + TFPT
Sbjct: 92 FYQNFFHKGDPYEIFDITQITFPT 115
>AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain family
protein 7 protein.
Length = 778
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 112 YSSDDYNEGGYESYGDYEAQSTEHYEPE 195
Y DY +GGY+ YE Q EPE
Sbjct: 88 YQQQDY-QGGYDDSEQYEEQEEAEPEPE 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,988
Number of Sequences: 27780
Number of extensions: 220395
Number of successful extensions: 654
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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