Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20j22
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   0.92 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   2.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 244 LVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTP 351
           LVY  +  NEG    I N  +N+F  LT   F + P
Sbjct: 200 LVYIGD--NEGFALIIYNNSDNSFQRLTSSTFASDP 233


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +1

Query: 160 YEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYF 339
           Y A  ++   P Y R   Y   DM  +   Y+++  + G   + +  Y +  P+    + 
Sbjct: 66  YGAAGSQQDMP-YPRFPPYNRMDM--RNATYYQHQQDHGSGMDGMGGYRSASPSPGMGHM 122

Query: 340 ENTPWPDEDEVSPIV 384
            +TP P+    +PIV
Sbjct: 123 GHTPTPNGHPSTPIV 137


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 410 YTKNYTTVTSMQESLED 460
           YTK+  TV  M E++ED
Sbjct: 442 YTKDSYTVAGMGETIED 458


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 112 YSSDDYNEGGYESYG 156
           Y S  Y+EG Y  YG
Sbjct: 140 YVSTVYSEGSYGEYG 154


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 145 ESYGDYEAQSTEHYEPEYDRSSYYKMP 225
           E Y  Y A +      E+D  S+Y  P
Sbjct: 771 EHYALYTAMAPHATASEFDEMSFYYSP 797


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 112 YSSDDYNEGGYESYG 156
           Y S  Y+EG Y  YG
Sbjct: 230 YVSTVYSEGSYGEYG 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,251
Number of Sequences: 438
Number of extensions: 2708
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)