Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j21
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.55
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 1.7
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 5.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 5.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 6.8
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 25 6.8
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.0
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.55
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +3
Query: 15 PPVGPHATRYS*SPRG*TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPAT 194
PP +T + SP T +S + +PP + + P + S+ PPA+
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTP--TVPPTSTSSTSTPPPPAS 321
Query: 195 LHTRGEESSPSPA 233
+ G SSP P+
Sbjct: 322 TSSTGTSSSPLPS 334
Score = 27.9 bits (59), Expect = 0.96
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 PPVGPHATRYS*SPRG*TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSV-APPA 191
PP +T + +P T +S + +PP G++S + P + +S+ PP
Sbjct: 151 PPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 210
Query: 192 TLHTRGEESSPSP 230
+ + SSP P
Sbjct: 211 STSSTDTNSSPLP 223
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +3
Query: 15 PPVGPHATRYS*SPRG*TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPAT 194
PP +T S SP T +S + +PP + + P + S+ PPA+
Sbjct: 318 PPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP--TVPPTSTSSTSTPPPPAS 375
Query: 195 LHTRGEESSP 224
+ G SSP
Sbjct: 376 TSSTGTSSSP 385
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 132 EQRGWRPRGPVAEDESRQRSTPFSPEGSNCSASRAARPAATLT 4
E R W RGP+ ES +R S+ + + A P+AT T
Sbjct: 223 EPREWVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTT 265
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 317 KCPHRIRAITEGSA-GGPPQYSDDAACRAAVLVRDXDTAATHSRSLIYLYRDT 472
KC R + + G P+ +DD A +V D A+ S + YR+T
Sbjct: 434 KCHARCELLVPANCKNGEPEVADDDAVDTSVTATDDFDASASSSNAYESYRNT 486
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 5.1
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 51 SPRG*TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATLHTRGEESSPSP 230
SP SSV++T L DR A+S+ + L +SS+ PPA+ + ++P+P
Sbjct: 218 SPIPVRTSSVSSTY-LTQDREASSKNCL------SKALAFSSIEPPASSASTSPRNTPTP 270
Query: 231 A 233
+
Sbjct: 271 S 271
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 222 PSPALREVLQIIREAWTEPTSLFDRW*VAGQSSVLTE 332
PSP +E ++ IR+ + LFD +A QSS E
Sbjct: 627 PSPLTKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRE 663
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 314 LPGYSPAIEQRSGLGPGLADDLK 246
L P++E++S + PGL DD++
Sbjct: 24 LKDVKPSLEEKSYITPGLVDDVE 46
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 280 VGSVQASRMI*STSRSAGDGLLSSPLVCNVAGGATL 173
VG VQ S + SRS GL+SS +V + TL
Sbjct: 37 VGEVQDSEHFTTASRSVKTGLISSAVVSSWTWPGTL 72
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 509 SARQMFVSLSSVECLGINRSGSANVSRRCLC 417
S+ Q F+ LS EC ++ + N +C+C
Sbjct: 908 SSNQSFLELSQTECQRLDAWENENEILQCVC 938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,860
Number of Sequences: 5004
Number of extensions: 43095
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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