Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j21
(519 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 33 0.093
Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 0.86
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 29 2.0
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 29 2.6
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 8.0
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 27 8.0
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 27 8.0
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 8.0
AF067219-1|AAC17036.1| 74|Caenorhabditis elegans Hypothetical ... 27 8.0
AF038608-13|AAC25819.1| 253|Caenorhabditis elegans Hypothetical... 27 8.0
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 27 8.0
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 27 8.0
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 33.5 bits (73), Expect = 0.093
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 155 PVSQAGVWSSAAGGPAVRWQRTSRGNARHRSAPRALTV 42
PVS+ G+ S GG + RT+RGN RH +A T+
Sbjct: 71 PVSKKGIAQSGKGGRSSSNWRTTRGNGRHVAADPKFTI 108
>Z81485-2|CAB03974.2| 708|Caenorhabditis elegans Hypothetical
protein C49F5.2 protein.
Length = 708
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 385 CSMPGRSTRPGXRHRRDTFALPDLFIPRHSTL 480
C+ P R T+ RH+R T++ F P HST+
Sbjct: 137 CTFPARQTKT-KRHKRKTYSTISSFAPHHSTI 167
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 0.86
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 66 TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATLHTRGEESSPSPA 233
T S + P PP RG S AAP +R ++ APPAT + P+PA
Sbjct: 284 TPPSSGTSAPQPPPRG--STAAPGTRAPPATRAPPATRAPPATTRAPPATTRPAPA 337
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +3
Query: 18 PVGPHATRYS*SPRG*TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATL 197
P P R S R + +RP+P + ASR + + R LR PP+T
Sbjct: 64 PTTPATGRASLPERSAMAKPASCSRPIPTMQSTASRISTLTAASSFRQLRTGRPPPPSTQ 123
Query: 198 HTRGEES 218
+ S
Sbjct: 124 RSTATSS 130
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +3
Query: 18 PVGPHATRYS*SPRG*TVSSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATL 197
P P R S R + +RP+P + ASR + + R LR PP+T
Sbjct: 64 PTTPATGRASLPERSAMAKPASCSRPIPTMQSTASRISTLTAASTFRQLRTGRPPPPSTQ 123
Query: 198 HTRGEES 218
+ S
Sbjct: 124 RSTATSS 130
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +3
Query: 75 SVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATLHTRGEESSPSPALR 239
S A R +PP R S +A S R + S +PPA R S SPA R
Sbjct: 399 SPAPKREIPPARRRRSPSASKSPPAPKRA-KSRSKSPPAPRRRRSPSQSKSPAPR 452
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 93 PLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATLHTRGEESSPSPALRE 242
PLP RGAA + S +G +L+ S P ++RG + +E
Sbjct: 1357 PLPKRRGAAPDSTIASSSSNGSILKNGSGPSPKKRNSRGSVKGRQNSTKE 1406
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 72 SSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPP 188
SS A +RP P RA P + G +R+ ++ PP
Sbjct: 465 SSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPP 503
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 72 SSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPP 188
SS A +RP P RA P + G +R+ ++ PP
Sbjct: 502 SSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPP 540
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 93 PLPPDRGAASRAAPYSRLGDGRVLRYSSVAPPATLHTRGEESSPSPALRE 242
PLP RGAA + S +G +L+ S P ++RG + +E
Sbjct: 1357 PLPKRRGAAPDSTIASSSSNGSILKNGSGPSPKKRNSRGSVKGRQNSTKE 1406
>AF067219-1|AAC17036.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.15 protein.
Length = 74
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 387 QHAGPQYSSGTXTPPRHIRAP 449
Q AGPQY++ PP++ AP
Sbjct: 44 QGAGPQYAAAPPPPPQYAAAP 64
>AF038608-13|AAC25819.1| 253|Caenorhabditis elegans Hypothetical
protein C09G12.1 protein.
Length = 253
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 400 RSTRPGXRHRRDTFALPDLFIPR 468
R TR HR D FALP LF R
Sbjct: 13 RRTRSPLDHRTDVFALPPLFPAR 35
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 72 SSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPP 188
SS A +RP P RA P + G +R+ ++ PP
Sbjct: 441 SSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPP 479
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 72 SSVAATRPLPPDRGAASRAAPYSRLGDGRVLRYSSVAPP 188
SS A +RP P RA P + G +R+ ++ PP
Sbjct: 502 SSSAFSRPPPTQLATQRRAPPLASTGLPATVRWEAIPPP 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,989
Number of Sequences: 27780
Number of extensions: 302672
Number of successful extensions: 981
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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