Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j16
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.97
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 28 1.3
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 3.9
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 26 3.9
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 26 5.2
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 5.2
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 6.9
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 6.9
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 6.9
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 9.1
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 25 9.1
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.97
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 376 TNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSS-LPTVSVFMDSSTR 200
++S+P+T S S SS S S +S P+S I MS S+ + TV+V SS+
Sbjct: 205 SSSVPITS--STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262
Query: 199 VLGSSEP 179
S P
Sbjct: 263 STSSEVP 269
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 126 ENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 227
ENVI +G + + +DPN +E +MKTL
Sbjct: 105 ENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTL 138
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 98 NHHRGDGLQRKRDYWLQGVL 157
N H+G G+ K D W GVL
Sbjct: 223 NVHKGFGIDEKSDIWALGVL 242
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 232 TVSVFMDSSTRVLGSSEPPLYAYAW 158
T ++M+ ++ + G+S PP Y Y +
Sbjct: 194 TTPLYMERASYLFGASNPPAYTYTY 218
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 430 RHDLLHVWYAK*LLFCRF 377
R+D LHVW LL C+F
Sbjct: 20 RYDTLHVWKLIKLLICKF 37
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 533 RDRGHCASSRRREYDSQTKVYVHHAPSKSCVSAH 634
R R + A SR Y+ ++Y H + S C+S +
Sbjct: 479 RHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVN 512
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 459 SRLECHDDTDECQVYILDAEG 521
SR EC DD DE + DA+G
Sbjct: 274 SRCECLDDLDEPTHFAYDAQG 294
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 99 ITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 227
+ + T YN+ IG GY + Y+ P+ ++ES+K L
Sbjct: 135 VRYIRTHYNDEFCIGVAGYPEGYS-------PDDDIDESIKHL 170
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 51 NLDITPPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTR 203
N+ TP ET+ + ++ + D E+ + + Y+Y GG L+ N R
Sbjct: 127 NIIPTPANETVPR-IKQPSIALDSLESPVSAPSRHQSTYSYKGGPLNYNLR 176
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 353 LAAAFVVAKTLFAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQ 225
+AAA VA ++FA A + ++A +LP + IF +S+
Sbjct: 317 VAAAKTVAPSVFATFAFRISVMYAVTRILPAIQNNIIFLEYSR 359
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 560 RRREYDSQTKVYVHHAPSKSCVSAH 634
+RRE + T VYVH+A +S H
Sbjct: 35 QRREVELDTPVYVHYAKYRSARFYH 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,036
Number of Sequences: 5004
Number of extensions: 52958
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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