Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20j16
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    31   0.52 
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    31   0.52 
Z81031-8|CAJ55248.1|  363|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69903-8|CAD56585.3|  363|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69903-5|CAH60762.2|  497|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69903-4|CAA93775.3|  479|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69903-3|CAI79241.1|  480|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AY836558-1|AAW21316.1|  479|Caenorhabditis elegans casein kinase...    30   1.6  
AY836557-1|AAW21315.1|  297|Caenorhabditis elegans casein kinase...    30   1.6  
AY836556-1|AAW21314.1|  479|Caenorhabditis elegans casein kinase...    30   1.6  
AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    29   2.1  
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    29   2.8  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        29   2.8  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    29   2.8  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   3.7  
AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 253
           NHH    L R R  W++ V  GVC++   A +      + +   CG+ R  H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  NHHRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTRRRIHENADCGQRRFAH 253
           NHH    L R R  W++ V  GVC++   A +      + +   CG+ R  H
Sbjct: 408 NHHANRNL-RVRSSWVKYVFNGVCLELERAAAWTGAPLLEDTECCGKERCQH 458


>Z81031-8|CAJ55248.1|  363|Caenorhabditis elegans Hypothetical
           protein F46F2.2b protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 140 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 173


>Z69903-8|CAD56585.3|  363|Caenorhabditis elegans Hypothetical
           protein F46F2.2b protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 140 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 173


>Z69903-5|CAH60762.2|  497|Caenorhabditis elegans Hypothetical
           protein F46F2.2c protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 289


>Z69903-4|CAA93775.3|  479|Caenorhabditis elegans Hypothetical
           protein F46F2.2a protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 289


>Z69903-3|CAI79241.1|  480|Caenorhabditis elegans Hypothetical
           protein F46F2.2d protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 289


>AY836558-1|AAW21316.1|  479|Caenorhabditis elegans casein kinase I
           epsilon/delta kin-20C protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 289


>AY836557-1|AAW21315.1|  297|Caenorhabditis elegans casein kinase I
           epsilon/delta kin-20B protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 74  EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 107


>AY836556-1|AAW21314.1|  479|Caenorhabditis elegans casein kinase I
           epsilon/delta kin-20A protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 107 DGDFHVLLQRFLGRGNVQVFNFVRTRFHLRVAVL 6
           +GD++V++   LG     +FNF + +F L+  +L
Sbjct: 256 EGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLL 289


>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 399 FAYHTCNKSWRCGVSTSKMYSRLECHDDTDECQVYILDAEGNPINVT 539
           F  + C+++   G+S + M   L+C ++ D C +   + EG+ I  T
Sbjct: 23  FDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFT 69


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 320 FAVTAPTVD*LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIRLVVPLVA 141
           FA     V+ + A LA L + PH  I    S R H      +GI  A ++ + +++    
Sbjct: 18  FATLTQLVEFVVAILAFLMNIPHLFILTRKSMRTHITNSLMIGISIADMITLFMII---- 73

Query: 140 NNHVFV 123
           NN ++V
Sbjct: 74  NNRIYV 79


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 69   PKETLQKDVEITIVETDYNENVIIGYKGYYQA 164
            P++ +Q++ +  IVET++++N+II  KG   A
Sbjct: 2346 PRQIVQENTQ-EIVETEFDDNIIISAKGILHA 2376


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 69   PKETLQKDVEITIVETDYNENVIIGYKGYYQA 164
            P++ +Q++ +  IVET++++N+II  KG   A
Sbjct: 2346 PRQIVQENTQ-EIVETEFDDNIIISAKGILHA 2376


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 292 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 191
           N  P SH   +PH S S+   + +++DS   V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 292 NSSPTSHCCLIPHMSKSSLPTVSVFMDSSTRVLG 191
           N  P SH   +PH S S+   + +++DS   V G
Sbjct: 127 NQIPDSHNKSVPHFSNSNFAPMVLYLDSEEEVRG 160


>AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical
           protein Y18H1A.7 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 285 EELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTSKMYSR 464
           +E+I+ W  D  E   D++G       +  +KR NN      +C KS     ST K+   
Sbjct: 46  KEIIEIWSDDDSE---DDDGDVITGSQEAQLKRLNNEEAGSSSCRKSPETAKSTPKVRKP 102

Query: 465 LE 470
           +E
Sbjct: 103 VE 104


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 480 DTDECQVYILDAEGNPINVTVDTALHRDGVSMILKQKSTFTTRQVKAACLL 632
           + D  +++ L A  N   VTV T    DG  M L  ++ F    +K A LL
Sbjct: 311 NNDITKIFELSAWLNAARVTVKTVYIADGTLMALGSRADFRHNFIKDAVLL 361


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 146  QGVLPGVCVQR-RLAGSQHTRRRIHENADCGQRRFAHVGYQAAVRG 280
            + ++ G CV R ++ G  HT     E ADC Q      G +  ++G
Sbjct: 1239 EAMVDGGCVVRVKVGGGCHTNEECVEGADCVQNSCKCTGNKTELKG 1284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,469
Number of Sequences: 27780
Number of extensions: 313888
Number of successful extensions: 1072
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)