Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20j16
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.61 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.7  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   9.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 82  SVSLGGVMSKFLILYGPVFICAL 14
           S +LG +MS F++ + P F+ AL
Sbjct: 371 STTLGIIMSAFIVCWLPFFVLAL 393


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 366 KELVKRQNNNHFAYH 410
           K   K QNNNH+  H
Sbjct: 112 KNQYKNQNNNHYTSH 126


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +3

Query: 282 GEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWR 431
           GE L DR GS+S +    +    +  +  E +     N   Y    + W+
Sbjct: 423 GEGLADRRGSESSDSVLLSPEASKATEAVEFIAEHLRNEDLYIQTREDWK 472


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 117 DYNENVIIGYKGYYQAYAYNGGSL 188
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 117 DYNENVIIGYKGYYQAYAYNGGSL 188
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 117 DYNENVIIGYKGYYQAYAYNGGSL 188
           DY + +  GY+G  +  A+NGG +
Sbjct: 229 DYPD-IYSGYEGALRCLAHNGGEI 251


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 6   EHCNAQMKTGPYKIKNLDITPPKE 77
           ++CN++  TG Y    +D+   +E
Sbjct: 217 DYCNSKTNTGEYSCLKVDLLFKRE 240


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 6   EHCNAQMKTGPYKIKNLDITPPKE 77
           ++CN++  TG Y    +D+   +E
Sbjct: 217 DYCNSKTNTGEYSCLKVDLLFKRE 240


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 189 DPNTRVEESMKTLTVGKEDLLMW 257
           DP   +   +K LT G   L+ W
Sbjct: 40  DPEAGIGAVLKVLTTGLPALISW 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,818
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)