Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j12
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.28
01_05_0490 + 22672241-22674679 31 0.37
03_06_0422 + 33818887-33819996 31 0.49
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 0.85
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 2.0
07_03_1191 + 24690936-24691029,24691184-24691377 29 2.0
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 2.0
02_01_0775 + 5775949-5777385 29 2.0
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 3.4
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 3.4
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 3.4
08_02_1172 + 24898290-24899141,24900864-24901328 28 4.5
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 27 6.0
04_03_1022 - 21778315-21779007 27 6.0
03_02_0662 - 10250235-10250433,10250692-10253105 27 6.0
12_01_0686 - 5855216-5858263 27 7.9
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 27 7.9
04_04_1030 - 30249160-30250403,30250787-30251666 27 7.9
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 7.9
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 54 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 182
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 197 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 340
+P + + T+T P L R+W + E+VLEQ S + MP PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.49
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 441 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 271
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 54 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 155
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 231 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 61
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 54 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 164
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 56 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 229
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 230 LPNS 241
+PN+
Sbjct: 239 MPNA 242
>02_01_0775 + 5775949-5777385
Length = 478
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 141 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRTPR 4
GG +W Q RV G GC G + CGA P+
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGAPMVAVPQ 392
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 450 NSLESEEQQERHHKTEQTHSLRQ 382
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = -1
Query: 477 MAVVVFLK-VNSLESEEQQERHHKTEQTHS---LRQGETQNGV*EQLLLEGGVPGIADDE 310
+A ++ LK + S ++ ++ EQT + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 309 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 220
GAE S+ + T+ + T T+ G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 208 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 62
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 232
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 233 P 235
P
Sbjct: 100 P 100
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -1
Query: 297 CSNTSSGTSYSHCRCT---STNEF--GSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGY 133
C N ++G Y C C+ S N + G +N+ EGP SR + GGY
Sbjct: 261 CVNATNGKGYL-CNCSAGYSGNPYVTGGCININECELRREGPAMYPCYSGSRCYDTEGGY 319
Query: 132 CCK 124
CK
Sbjct: 320 KCK 322
>04_03_1022 - 21778315-21779007
Length = 230
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +2
Query: 20 CRAPHLIKTKCCLPPD*SPLQPGL--PSSATLHWCDHLQQYPPIH 148
C + HL+ PP + P L PS A W DH Y P H
Sbjct: 29 CSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQWYDHPPNYHPPH 73
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 225 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCK 124
V ++ D GP+ + L +DS++H + G CC+
Sbjct: 814 VAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQ 847
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 113 WCDHLQQYPPIHRWYLLSL-HSSLQ---CGPSRPHRSLRTLTLLPNSL 244
WCDH+ +Y P + +LSL + SL C RSL T+ L N L
Sbjct: 233 WCDHIAKYTP--KLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLL 278
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 327 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 232
G D +E+C+ GT+ + RC+ TN FG
Sbjct: 684 GFRDRRRSENCTMQQDGTNKRNSRCSETN-FG 714
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 27.1 bits (57), Expect = 7.9
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Frame = -1
Query: 330 PGIADDEGAEDCSNT--SSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSR 157
P A G+ CS + SY R + G+ VL ++G +C+E R +
Sbjct: 200 PTSAVGSGSTRCSKAFIAEQDSYVFSRHDLYKDLGNLPMVLD--WYIQGGNCKEASRSRQ 257
Query: 156 YHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRC 31
Y CK + C EDG G R + SGG +I C
Sbjct: 258 ------TYMCKENSYCYEVEDG-AGYRCNCSGGYTGNPYIGC 292
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 110 HWCDHLQQYPPIHRWYLLS 166
HWC Q P IHR++L S
Sbjct: 516 HWCQLEQSAPTIHRFFLPS 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,033
Number of Sequences: 37544
Number of extensions: 319840
Number of successful extensions: 1175
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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