Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j09
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 204 9e-54
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 200 2e-52
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.45
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 28 1.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.4
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.4
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 7.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.7
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.7
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 9.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 204 bits (498), Expect = 9e-54
Identities = 99/184 (53%), Positives = 133/184 (72%)
Frame = +1
Query: 85 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 264
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 265 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 444
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 445 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSX 624
R +K PGVTV S KDE+IIEGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVS
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
Query: 625 KTTV 636
+ +
Sbjct: 182 RGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 200 bits (487), Expect = 2e-52
Identities = 97/184 (52%), Positives = 131/184 (71%)
Frame = +1
Query: 85 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 264
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 265 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 444
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 445 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSX 624
R +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q V+NKDIRKFLDG+YVS
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
Query: 625 KTTV 636
+ +
Sbjct: 182 RGNI 185
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.5 bits (63), Expect = 0.45
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 112 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 279
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 280 AVRTVCSHVENMIKGVT 330
+ T+CS + N++ VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 526 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTTVVLDDI 651
+ D+S+SA + T + N+++ K +GL+++ +T+ LD I
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS-FLDGI 118
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 481 NSPKQKDELIIEGNSLEDVSSSAALIQQS 567
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 29 FSFLNDLFPALVSNKAQT*SKL 94
FS LND FP+LVS + SKL
Sbjct: 277 FSSLNDTFPSLVSTVVKMSSKL 298
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +1
Query: 145 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 324
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 325 VTK 333
++K
Sbjct: 1170 LSK 1172
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 278 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 168
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 7.4
Identities = 6/23 (26%), Positives = 15/23 (65%)
Frame = -2
Query: 486 RVNDGHTRCHLYPSDVFLPQEVT 418
++N+ ++ CH YP + +P ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 288 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 166
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 294 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGPFNCHQT 148
D P+G GS F+ V+H+N N+ + +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 51 FRLLCQTKPKHEANCSKSESQNPRRA 128
F +LC + K + C K + +NP A
Sbjct: 25 FLILCMRRNKRQLACMKCQCENPMAA 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,642
Number of Sequences: 5004
Number of extensions: 58190
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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