Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20j02
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 131 2e-31
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 130 3e-31
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 1.6
07_01_0385 - 2871628-2872131 28 2.7
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 3.6
07_03_1237 + 25073010-25073513 27 6.3
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585... 27 6.3
03_02_0053 - 5289119-5289176,5289302-5289593,5289689-5289864,529... 26 8.4
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 131 bits (316), Expect = 2e-31
Identities = 57/89 (64%), Positives = 68/89 (76%)
Frame = +3
Query: 75 LSAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 254
+ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 30 IQTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 89
Query: 255 CKRTVAGGAWVFSTTAASSCRSAVRRLRE 341
C + AGGA+ +T +A + RS +RRLRE
Sbjct: 90 CGKVKAGGAYTMNTASAVTVRSTIRRLRE 118
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 130 bits (314), Expect = 3e-31
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +3
Query: 84 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 263
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 28 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 87
Query: 264 TVAGGAWVFSTTAASSCRSAVRRLRE 341
AGGA+ +T +A + RS +RRLRE
Sbjct: 88 VKAGGAYTMNTASAVTVRSTIRRLRE 113
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 201 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 338
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 186 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 284
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 165 EVTQHAKYTCSFCGKDAM 218
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 219 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 314
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>04_04_1651 -
35057525-35057680,35058302-35058311,35058429-35058569,
35058675-35058784,35058907-35059006,35059108-35059308,
35059674-35059879,35060504-35060716,35060785-35060923,
35061370-35061606,35061688-35061893,35062664-35062759,
35062900-35063040
Length = 651
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 79 VPNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 216
VP+ R L +A + +P Y + KR+ NTQ L+ ++R++
Sbjct: 568 VPDTELRESLRLAVAEILLPAYRSFLKRFGLSNTQEFLSLELMRLV 613
>03_02_0053 -
5289119-5289176,5289302-5289593,5289689-5289864,
5290272-5290493,5291261-5291337
Length = 274
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 48 SPHVYKILKLSAKRTKKVGITGKYG 122
+P VYKIL+ + R + + GK+G
Sbjct: 245 TPGVYKILRDGSSRQETTAVLGKFG 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,701,345
Number of Sequences: 37544
Number of extensions: 194801
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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